Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- endoplasmic reticulum 2
- plasma membrane 2
- golgi 2
- extracellular 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010423 | |
| PGSC0003DMT400014323 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25140.1 | PGSC0003DMT400010423 | AT3G18570.1 | 21798944 |
| AT4G25140.1 | PGSC0003DMT400014323 | AT3G18570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g034040.1.1 | Tomato | cytosol, golgi, plasma membrane, plastid | 97.3 | 97.96 |
| VIT_16s0013g00880.t01 | Wine grape | plasma membrane | 66.22 | 68.06 |
| KRH34604 | Soybean | endoplasmic reticulum | 63.51 | 63.95 |
| GSMUA_Achr1P00500_001 | Banana | extracellular, golgi, plasma membrane | 55.41 | 63.57 |
| KRG92187 | Soybean | nucleus | 60.81 | 61.22 |
| PGSC0003DMT400062064 | Potato | plasma membrane | 52.03 | 57.46 |
| AT5G51210.1 | Thale cress | cytosol, golgi, plasma membrane | 52.7 | 55.32 |
| Os04t0546500-01 | Rice | plastid | 52.7 | 52.7 |
| PGSC0003DMT400067532 | Potato | mitochondrion | 49.32 | 52.14 |
| TraesCS2B01G436400.1 | Wheat | golgi, peroxisome, plasma membrane | 56.08 | 51.88 |
| TraesCS2D01G414800.1 | Wheat | golgi | 56.08 | 51.88 |
| TraesCS2A01G417500.1 | Wheat | golgi | 55.41 | 50.93 |
| Zm00001d002768_P001 | Maize | golgi, peroxisome, plasma membrane | 53.38 | 50.64 |
| AT4G25140.1 | Thale cress | cytosol, golgi, plasma membrane | 58.78 | 50.29 |
| CDY03377 | Canola | cytosol | 56.76 | 49.41 |
| EES12607 | Sorghum | golgi, peroxisome, plasma membrane | 53.38 | 49.38 |
| CDY05844 | Canola | cytosol | 49.32 | 48.99 |
| Bra035733.1-P | Field mustard | plasma membrane | 49.32 | 48.99 |
| CDY34345 | Canola | cytosol | 56.08 | 48.82 |
| Zm00001d027258_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 33.78 | 48.54 |
| Bra010474.1-P | Field mustard | cytosol, golgi, plasma membrane | 58.78 | 48.33 |
| CDY24856 | Canola | cytosol | 58.78 | 48.33 |
| CDX71696 | Canola | cytosol | 48.65 | 48.32 |
| CDY08967 | Canola | cytosol, golgi, plasma membrane | 56.76 | 46.93 |
| CDY11058 | Canola | cytosol | 57.43 | 46.45 |
| CDX92679 | Canola | cytosol | 56.76 | 45.16 |
| Bra019186.1-P | Field mustard | cytosol, golgi, plasma membrane | 56.08 | 45.11 |
| Bra013866.1-P | Field mustard | cytosol, golgi, nucleus | 57.43 | 43.59 |
| PGSC0003DMT400065474 | Potato | golgi, plasma membrane, vacuole | 39.86 | 42.14 |
| TraesCS5B01G181700.1 | Wheat | golgi | 43.92 | 38.92 |
| TraesCS5D01G188400.1 | Wheat | golgi, peroxisome, plasma membrane | 43.92 | 38.92 |
| KXG40436 | Sorghum | cytosol, golgi, plasma membrane | 43.24 | 38.32 |
| Os09t0324000-02 | Rice | plastid | 39.86 | 37.34 |
| HORVU5Hr1G056030.1 | Barley | golgi, peroxisome, plasma membrane | 41.89 | 37.13 |
| PGSC0003DMT400046816 | Potato | plastid | 36.49 | 36.49 |
| PGSC0003DMT400014323 | Potato | plastid | 39.86 | 35.12 |
| PGSC0003DMT400032872 | Potato | cytosol, golgi, plastid | 35.81 | 31.93 |
| PGSC0003DMT400010423 | Potato | golgi, mitochondrion, plasma membrane, plastid | 27.7 | 27.52 |
Protein Annotations
| EntrezGene:102594926 | MapMan:5.9.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005811 | GO:GO:0012511 | GO:GO:0016020 | GO:GO:0016021 | UniProt:M1BY63 |
| InterPro:Oleosin | PFAM:PF01277 | EnsemblPlantsGene:PGSC0003DMG400021587 | PGSC:PGSC0003DMG400021587 | EnsemblPlants:PGSC0003DMT400055585 | ScanProsite:PS00811 |
| PANTHER:PTHR33203 | PANTHER:PTHR33203:SF7 | TMHMM:TMhelix | UniParc:UPI00029492B6 | RefSeq:XP_006357933.1 | SEG:seg |
Description
Oleosin [Source:PGSC_GENE;Acc:PGSC0003DMG400021587]
Coordinates
chr6:-:35753736..35754218
Molecular Weight (calculated)
15756.2 Da
IEP (calculated)
10.320
GRAVY (calculated)
0.217
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYYGQPQH TQHQFLHGAG QQPRSHQMVK AATAVTAGGS LLLLSGLTLA ATVIALTIAT PVLVIFSPVI VPAVITLFLL FSGFLASGGF GVAAISVLSW
101: IYRYVTGKRP PGADQLEQAR RKLATKAGEM KDKAQEFGQQ HITGTHQT
101: IYRYVTGKRP PGADQLEQAR RKLATKAGEM KDKAQEFGQQ HITGTHQT
001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
Arabidopsis Description
OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.