CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

cytosol: 16847873
cytosol: 19562800
cytosol: 21803444

msms PMID: 21803444 doi

P Jolivet, C Boulard, A Bellamy, B Valot, S d'Andréa, M Zivy, N Nesi, T Chardot

INRA, AgroParisTech, Institut Jean-Pierre Bourgin, UMR 1318, F-78000 Versailles, France. Pascale.Jolivet@versailles.inra.fr

msms PMID: 19562800 doi

P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi

NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75969
CDX82338
CDX92248
CDX95515
CDX99345
CDY06745
CDY18527

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25140.1	CDX75969	AT3G18570.1	21798944
AT4G25140.1	CDX82338	AT3G18570.1	21798944
AT4G25140.1	CDX92248	AT3G18570.1	21798944
AT4G25140.1	CDX95515	AT3G18570.1	21798944
AT4G25140.1	CDX99345	AT3G18570.1	21798944
AT4G25140.1	CDY06745	AT3G18570.1	21798944
AT4G25140.1	CDY18527	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34345	Canola	cytosol	95.29	95.29
AT4G25140.1	Thale cress	cytosol, golgi, plasma membrane	94.12	92.49
CDY24856	Canola	cytosol	91.76	86.67
CDY08967	Canola	cytosol, golgi, plasma membrane	90.0	85.47
CDY11058	Canola	cytosol	90.59	84.15
CDX92679	Canola	cytosol	91.18	83.33
VIT_16s0013g00880.t01	Wine grape	plasma membrane	53.53	63.19
GSMUA_Achr1P00500_001	Banana	extracellular, golgi, plasma membrane	44.71	58.91
PGSC0003DMT400055585	Potato	cytosol, endoplasmic reticulum, nucleus, plastid	49.41	56.76
Solyc06g034040.1.1	Tomato	cytosol, golgi, plasma membrane, plastid	48.82	56.46
CDY05844	Canola	cytosol	47.65	54.36
CDX71696	Canola	cytosol	47.06	53.69
KRG92187	Soybean	nucleus	45.88	53.06
KRH34604	Soybean	endoplasmic reticulum	45.29	52.38
Os04t0546500-01	Rice	plastid	44.12	50.68
Zm00001d027258_P001	Maize	endoplasmic reticulum, extracellular, vacuole	30.59	50.49
Zm00001d002768_P001	Maize	golgi, peroxisome, plasma membrane	44.71	48.72
CDY35326	Canola	plasma membrane	41.76	48.63
EES12607	Sorghum	golgi, peroxisome, plasma membrane	45.29	48.12
CDX77021	Canola	plasma membrane	40.59	47.59
TraesCS2A01G417500.1	Wheat	golgi	44.71	47.2
TraesCS2D01G414800.1	Wheat	golgi	44.12	46.88
TraesCS2B01G436400.1	Wheat	golgi, peroxisome, plasma membrane	42.94	45.62
HORVU5Hr1G056030.1	Barley	golgi, peroxisome, plasma membrane	42.35	43.11
TraesCS5D01G188400.1	Wheat	golgi, peroxisome, plasma membrane	41.76	42.52
TraesCS5B01G181700.1	Wheat	golgi	41.76	42.52
KXG40436	Sorghum	cytosol, golgi, plasma membrane	41.76	42.52
Os09t0324000-02	Rice	plastid	34.71	37.34
CDX92248	Canola	golgi, plasma membrane, plastid, vacuole	28.24	29.09
CDX77269	Canola	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane, plastid	23.53	28.57
CDX99345	Canola	golgi, plasma membrane, plastid, vacuole	27.65	28.48
CDX75969	Canola	cytosol, golgi, plasma membrane, plastid	25.29	26.06
CDX82338	Canola	golgi, plasma membrane, vacuole	25.29	26.06
CDY20040	Canola	cytosol	26.47	23.94
CDX95515	Canola	plasma membrane	22.94	23.78
CDY06745	Canola	plasma membrane	22.94	23.78
CDY03988	Canola	cytosol, endoplasmic reticulum, golgi	25.29	22.51
CDY49771	Canola	cytosol	24.71	22.34
CDY18527	Canola	golgi, plasma membrane, plastid	21.18	21.95
CDY11685	Canola	cytosol	23.53	20.0
CDX67456	Canola	cytosol	23.53	20.0
CDY50118	Canola	cytosol	24.12	17.9

Protein Annotations

EnsemblPlants:CDY03377	EnsemblPlantsGene:GSBRNA2T00116011001	GO:A0A078EQM5	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005811	GO:GO:0012511	GO:GO:0016020	GO:GO:0016021	InterPro:Oleosin
PANTHER:PTHR33203	PANTHER:PTHR33203:SF7	PFAM:PF01277	ProteinID:CDY03377	ProteinID:CDY03377.1	ScanProsite:PS00811
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEF76F	MapMan:5.9.2	:	:

Description

BnaC01g17050D

Coordinates

chrLK031943:-:66703..67915

Molecular Weight (calculated)

18572.2 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.224

Length

170 amino acids

Sequence
(BLAST)

001: MTDTARTHHD VTNRDQYSMM GRDRDQYNMY GRDYSKSRQI AKAVTAVTAG GSLLVLSSLT LVGTVIALTV ATPLLVIFSP ILVPALITVA MLITGFLSSG
101: GFGIAAITVF SWIYKYATGE HPQGSDKLDS ARMKLGSKAQ DLKDRAQYYG QQHTGGEHDR DRTRGTQHTT

Best Arabidopsis Sequence Match ( AT4G25140.1 )
(BLAST)

001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT

Arabidopsis Description

OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.