Factsheet for TraesCS2A01G417500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome, secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G415100.1
TraesCS1B01G445100.1
TraesCS1D01G422600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25140.1	TraesCS1A01G415100.1	AT3G18570.1	21798944
AT4G25140.1	TraesCS1B01G445100.1	AT3G18570.1	21798944
AT4G25140.1	TraesCS1D01G422600.1	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G414800.1	Wheat	golgi	98.14	98.75
TraesCS2B01G436400.1	Wheat	golgi, peroxisome, plasma membrane	96.89	97.5
Zm00001d002768_P001	Maize	golgi, peroxisome, plasma membrane	85.09	87.82
Os04t0546500-01	Rice	plastid	80.12	87.16
EES12607	Sorghum	golgi, peroxisome, plasma membrane	84.47	85.0
GSMUA_Achr1P00500_001	Banana	extracellular, golgi, plasma membrane	58.39	72.87
VIT_16s0013g00880.t01	Wine grape	plasma membrane	50.93	56.94
Solyc06g034040.1.1	Tomato	cytosol, golgi, plasma membrane, plastid	50.93	55.78
PGSC0003DMT400055585	Potato	cytosol, endoplasmic reticulum, nucleus, plastid	50.93	55.41
KRG92187	Soybean	nucleus	49.69	54.42
KRH34604	Soybean	endoplasmic reticulum	47.83	52.38
AT5G51210.1	Thale cress	cytosol, golgi, plasma membrane	43.48	49.65
AT4G25140.1	Thale cress	cytosol, golgi, plasma membrane	49.07	45.66
CDY03377	Canola	cytosol	47.2	44.71
CDY24856	Canola	cytosol	49.69	44.44
Bra010474.1-P	Field mustard	cytosol, golgi, plasma membrane	49.69	44.44
CDY34345	Canola	cytosol	46.58	44.12
CDY05844	Canola	cytosol	40.37	43.62
Bra035733.1-P	Field mustard	plasma membrane	40.37	43.62
CDY08967	Canola	cytosol, golgi, plasma membrane	48.45	43.58
CDX71696	Canola	cytosol	39.75	42.95
CDY11058	Canola	cytosol	47.83	42.08
Bra019186.1-P	Field mustard	cytosol, golgi, plasma membrane	47.83	41.85
CDX92679	Canola	cytosol	47.2	40.86
Bra013866.1-P	Field mustard	cytosol, golgi, nucleus	46.58	38.46
TraesCS1A01G415100.1	Wheat	plasma membrane	32.3	31.14

Protein Annotations

EnsemblPlants:TraesCS2A01G417500.1	EnsemblPlantsGene:TraesCS2A01G417500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0012511	GO:GO:0016020	GO:GO:0016021	InterPro:Oleosin	PANTHER:PTHR33203	PANTHER:PTHR33203:SF7
PFAM:PF01277	ScanProsite:PS00811	SEG:seg	TMHMM:TMhelix	MapMan:5.9.2	:

Description

No Description!

Coordinates

chr2A:+:673370165..673371029

Molecular Weight (calculated)

16353.8 Da

IEP (calculated)

9.610

GRAVY (calculated)

0.225

Length

161 amino acids

Sequence
(BLAST)

001: MAADHHRDRG VLGGGGAFGD RSGHGGYGGD HHEQQQQKQP AMMCALKAAT AATAAGSLLV LSGLILAGTV IALTVATPVL VIFSPVLVPA AIALALMSAG
101: FVTSGGLGVA ALSVFSWMYK YLTGKHPPGA DQLDHAKARL ASKARDIKDA AQTRIDQAQG A

Best Arabidopsis Sequence Match ( AT4G25140.1 )
(BLAST)

001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT

Arabidopsis Description

OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.