CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 3
peroxisome 1
mitochondrion 1
plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	golgi
Plant-mPloc:	golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

cytosol: 21803444

msms PMID: 21803444 doi

P Jolivet, C Boulard, A Bellamy, B Valot, S d'Andréa, M Zivy, N Nesi, T Chardot

INRA, AgroParisTech, Institut Jean-Pierre Bourgin, UMR 1318, F-78000 Versailles, France. Pascale.Jolivet@versailles.inra.fr

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75969
CDX82338
CDX92248
CDX95515
CDX99345
CDY06745
CDY18527

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25140.1	CDX75969	AT3G18570.1	21798944
AT4G25140.1	CDX82338	AT3G18570.1	21798944
AT4G25140.1	CDX92248	AT3G18570.1	21798944
AT4G25140.1	CDX95515	AT3G18570.1	21798944
AT4G25140.1	CDX99345	AT3G18570.1	21798944
AT4G25140.1	CDY06745	AT3G18570.1	21798944
AT4G25140.1	CDY18527	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010474.1-P	Field mustard	cytosol, golgi, plasma membrane	100.0	100.0
CDY08967	Canola	cytosol, golgi, plasma membrane	95.0	95.53
AT4G25140.1	Thale cress	cytosol, golgi, plasma membrane	88.33	91.91
CDY03377	Canola	cytosol	86.67	91.76
CDY34345	Canola	cytosol	86.11	91.18
CDY11058	Canola	cytosol	87.22	85.79
CDX92679	Canola	cytosol	87.22	84.41
VIT_16s0013g00880.t01	Wine grape	plasma membrane	50.56	63.19
GSMUA_Achr1P00500_001	Banana	extracellular, golgi, plasma membrane	42.22	58.91
PGSC0003DMT400055585	Potato	cytosol, endoplasmic reticulum, nucleus, plastid	48.33	58.78
Solyc06g034040.1.1	Tomato	cytosol, golgi, plasma membrane, plastid	47.78	58.5
CDY05844	Canola	cytosol	47.22	57.05
CDX71696	Canola	cytosol	46.67	56.38
KRH34604	Soybean	endoplasmic reticulum	45.56	55.78
KRG92187	Soybean	nucleus	45.0	55.1
Zm00001d027258_P001	Maize	endoplasmic reticulum, extracellular, vacuole	29.44	51.46
Os04t0546500-01	Rice	plastid	42.22	51.35
CDY35326	Canola	plasma membrane	41.11	50.68
Zm00001d002768_P001	Maize	golgi, peroxisome, plasma membrane	43.89	50.64
TraesCS2A01G417500.1	Wheat	golgi	44.44	49.69
CDX77021	Canola	plasma membrane	40.0	49.66
TraesCS2D01G414800.1	Wheat	golgi	43.89	49.38
EES12607	Sorghum	golgi, peroxisome, plasma membrane	43.89	49.38
TraesCS2B01G436400.1	Wheat	golgi, peroxisome, plasma membrane	42.78	48.12
KXG40436	Sorghum	cytosol, golgi, plasma membrane	41.11	44.31
TraesCS5B01G181700.1	Wheat	golgi	38.89	41.92
HORVU5Hr1G056030.1	Barley	golgi, peroxisome, plasma membrane	38.89	41.92
TraesCS5D01G188400.1	Wheat	golgi, peroxisome, plasma membrane	38.33	41.32
Os09t0324000-02	Rice	plastid	34.44	39.24
CDX77269	Canola	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane, plastid	23.89	30.71
CDX92248	Canola	golgi, plasma membrane, plastid, vacuole	27.78	30.3
CDX99345	Canola	golgi, plasma membrane, plastid, vacuole	27.22	29.7
CDX75969	Canola	cytosol, golgi, plasma membrane, plastid	25.0	27.27
CDX82338	Canola	golgi, plasma membrane, vacuole	25.0	27.27
CDY20040	Canola	cytosol	26.11	25.0
CDY06745	Canola	plasma membrane	22.78	25.0
CDX95515	Canola	plasma membrane	22.78	25.0
CDY49771	Canola	cytosol	25.56	24.47
CDY18527	Canola	golgi, plasma membrane, plastid	21.11	23.17
CDY03988	Canola	cytosol, endoplasmic reticulum, golgi	24.44	23.04
CDX67456	Canola	cytosol	23.33	21.0
CDY11685	Canola	cytosol	23.33	21.0
CDY50118	Canola	cytosol	23.89	18.78

Protein Annotations

MapMan:5.9.2	GO:A0A078GHK4	UniProt:A0A078GHK4	unigene:Bna.1245	EnsemblPlants:CDY24856	ProteinID:CDY24856
ProteinID:CDY24856.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005811
GO:GO:0012511	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00027340001	InterPro:Oleosin	PFAM:PF01277
ScanProsite:PS00811	PANTHER:PTHR33203	PANTHER:PTHR33203:SF7	TMHMM:TMhelix	UniParc:UPI0002545A48	SEG:seg

Description

BnaA08g14540DOleosin [Source:UniProtKB/TrEMBL;Acc:A0A078GHK4]

Coordinates

chrLK032164:+:584174..585395

Molecular Weight (calculated)

19516.1 Da

IEP (calculated)

9.492

GRAVY (calculated)

-0.248

Length

180 amino acids

Sequence
(BLAST)

001: MADTARTHHD ITSRDQYPIL GRDRDQYPYG RSDYQTSGQD YSKTRQIAKA ATAVTAGGSL LVLSSLTLVG TVIALTVATP LLVIFSPILV PALITVALLI
101: TGFLSSGGFG IAAITVFSWI YKYATGEHPQ GSDKLDSARM KLGTKAQDIK DRAQYYGQQH TGGEHDRDRT RGTHHTTTTT

Best Arabidopsis Sequence Match ( AT4G25140.1 )
(BLAST)

001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT

Arabidopsis Description

OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.