Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G415100.1 | |
| TraesCS1B01G445100.1 | |
| TraesCS1D01G422600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25140.1 | TraesCS1A01G415100.1 | AT3G18570.1 | 21798944 |
| AT4G25140.1 | TraesCS1B01G445100.1 | AT3G18570.1 | 21798944 |
| AT4G25140.1 | TraesCS1D01G422600.1 | AT3G18570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G181700.1 | Wheat | golgi | 98.2 | 98.2 |
| HORVU5Hr1G056030.1 | Barley | golgi, peroxisome, plasma membrane | 94.01 | 94.01 |
| Os09t0324000-02 | Rice | plastid | 63.47 | 67.09 |
| GSMUA_Achr1P00500_001 | Banana | extracellular, golgi, plasma membrane | 44.91 | 58.14 |
| Zm00001d027258_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 35.33 | 57.28 |
| KXG40436 | Sorghum | cytosol, golgi, plasma membrane | 56.29 | 56.29 |
| TraesCS2D01G414800.1 | Wheat | golgi | 50.9 | 53.12 |
| VIT_16s0013g00880.t01 | Wine grape | plasma membrane | 43.11 | 50.0 |
| Solyc06g034040.1.1 | Tomato | cytosol, golgi, plasma membrane, plastid | 39.52 | 44.9 |
| PGSC0003DMT400055585 | Potato | cytosol, endoplasmic reticulum, nucleus, plastid | 38.92 | 43.92 |
| KRH34604 | Soybean | endoplasmic reticulum | 37.72 | 42.86 |
| KRG92187 | Soybean | nucleus | 37.72 | 42.86 |
| CDY03377 | Canola | cytosol | 42.52 | 41.76 |
| AT4G25140.1 | Thale cress | cytosol, golgi, plasma membrane | 42.52 | 41.04 |
| AT5G51210.1 | Thale cress | cytosol, golgi, plasma membrane | 34.13 | 40.43 |
| CDY34345 | Canola | cytosol | 40.72 | 40.0 |
| CDY24856 | Canola | cytosol | 41.32 | 38.33 |
| Bra010474.1-P | Field mustard | cytosol, golgi, plasma membrane | 41.32 | 38.33 |
| CDY05844 | Canola | cytosol | 34.13 | 38.26 |
| Bra035733.1-P | Field mustard | plasma membrane | 34.13 | 38.26 |
| CDY11058 | Canola | cytosol | 41.32 | 37.7 |
| CDX92679 | Canola | cytosol | 41.92 | 37.63 |
| CDX71696 | Canola | cytosol | 33.53 | 37.58 |
| Bra019186.1-P | Field mustard | cytosol, golgi, plasma membrane | 41.32 | 37.5 |
| CDY08967 | Canola | cytosol, golgi, plasma membrane | 40.12 | 37.43 |
| Bra013866.1-P | Field mustard | cytosol, golgi, nucleus | 40.72 | 34.87 |
| TraesCS1D01G422600.1 | Wheat | plasma membrane | 26.35 | 26.35 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G188400.1 | EnsemblPlantsGene:TraesCS5D01G188400 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0012511 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Oleosin | PANTHER:PTHR33203 | PANTHER:PTHR33203:SF1 |
| PFAM:PF01277 | ScanProsite:PS00811 | SEG:seg | TMHMM:TMhelix | MapMan:5.9.2 | : |
Description
No Description!
Coordinates
chr5D:+:290674466..290674969
Molecular Weight (calculated)
16900.3 Da
IEP (calculated)
7.998
GRAVY (calculated)
0.275
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEQAFHRG GVHGGGSAIG PDYMRAIRGD DDYYGGHGQG HNQPAAVTLA KGVAAAAAAG SMLLLSALTL TGTVLALIVA TPLLVLFSPV LVPAAIAVTM
101: LTAGFVSSGA FGAAAVGVLA WMYKYLSHGT SSPPGADTVD HAGAKLDSKA HEVKNWAQHR LDQARTP
101: LTAGFVSSGA FGAAAVGVLA WMYKYLSHGT SSPPGADTVD HAGAKLDSKA HEVKNWAQHR LDQARTP
001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
Arabidopsis Description
OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.