Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24856 | Canola | cytosol | 95.53 | 95.0 |
| CDY03377 | Canola | cytosol | 85.47 | 90.0 |
| AT4G25140.1 | Thale cress | cytosol, golgi, plasma membrane | 86.59 | 89.6 |
| CDY34345 | Canola | cytosol | 84.36 | 88.82 |
| CDY11058 | Canola | cytosol | 86.03 | 84.15 |
| CDX92679 | Canola | cytosol | 86.03 | 82.8 |
| VIT_16s0013g00880.t01 | Wine grape | plasma membrane | 49.72 | 61.81 |
| GSMUA_Achr1P00500_001 | Banana | extracellular, golgi, plasma membrane | 41.34 | 57.36 |
| PGSC0003DMT400055585 | Potato | cytosol, endoplasmic reticulum, nucleus, plastid | 46.93 | 56.76 |
| Solyc06g034040.1.1 | Tomato | cytosol, golgi, plasma membrane, plastid | 46.37 | 56.46 |
| KRH34604 | Soybean | endoplasmic reticulum | 45.25 | 55.1 |
| CDY05844 | Canola | cytosol | 45.81 | 55.03 |
| KRG92187 | Soybean | nucleus | 44.69 | 54.42 |
| CDX71696 | Canola | cytosol | 45.25 | 54.36 |
| Os04t0546500-01 | Rice | plastid | 41.34 | 50.0 |
| Zm00001d002768_P001 | Maize | golgi, peroxisome, plasma membrane | 43.02 | 49.36 |
| CDY35326 | Canola | plasma membrane | 39.66 | 48.63 |
| Zm00001d027258_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 27.93 | 48.54 |
| TraesCS2A01G417500.1 | Wheat | golgi | 43.58 | 48.45 |
| CDX77021 | Canola | plasma membrane | 39.11 | 48.28 |
| TraesCS2D01G414800.1 | Wheat | golgi | 43.02 | 48.12 |
| EES12607 | Sorghum | golgi, peroxisome, plasma membrane | 43.02 | 48.12 |
| TraesCS2B01G436400.1 | Wheat | golgi, peroxisome, plasma membrane | 41.9 | 46.88 |
| KXG40436 | Sorghum | cytosol, golgi, plasma membrane | 39.66 | 42.52 |
| TraesCS5B01G181700.1 | Wheat | golgi | 37.99 | 40.72 |
| HORVU5Hr1G056030.1 | Barley | golgi, peroxisome, plasma membrane | 37.99 | 40.72 |
| TraesCS5D01G188400.1 | Wheat | golgi, peroxisome, plasma membrane | 37.43 | 40.12 |
| Os09t0324000-02 | Rice | plastid | 32.96 | 37.34 |
| CDX77269 | Canola | endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane, plastid | 24.02 | 30.71 |
| CDX92248 | Canola | golgi, plasma membrane, plastid, vacuole | 26.82 | 29.09 |
| CDX99345 | Canola | golgi, plasma membrane, plastid, vacuole | 26.26 | 28.48 |
| CDX75969 | Canola | cytosol, golgi, plasma membrane, plastid | 24.02 | 26.06 |
| CDX82338 | Canola | golgi, plasma membrane, vacuole | 24.02 | 26.06 |
| CDY20040 | Canola | cytosol | 25.7 | 24.47 |
| CDY49771 | Canola | cytosol | 25.7 | 24.47 |
| CDX95515 | Canola | plasma membrane | 22.35 | 24.39 |
| CDY06745 | Canola | plasma membrane | 22.35 | 24.39 |
| CDY03988 | Canola | cytosol, endoplasmic reticulum, golgi | 24.58 | 23.04 |
| CDY18527 | Canola | golgi, plasma membrane, plastid | 20.67 | 22.56 |
| CDY11685 | Canola | cytosol | 22.91 | 20.5 |
| CDX67456 | Canola | cytosol | 22.91 | 20.5 |
| CDY50118 | Canola | cytosol | 23.46 | 18.34 |
Protein Annotations
| EnsemblPlants:CDY08967 | EnsemblPlantsGene:GSBRNA2T00001020001 | GO:A0A078F778 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0012511 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Oleosin | PANTHER:PTHR33203 |
| PANTHER:PTHR33203:SF7 | PFAM:PF01277 | ProteinID:CDY08967 | ProteinID:CDY08967.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EE2420 | UniProt:A0A078F778 | MapMan:5.9.2 | : | : | : |
Description
BnaC08g11970DBnaC08g11970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F778]
Coordinates
chrLK031990:+:893879..895535
Molecular Weight (calculated)
19426.0 Da
IEP (calculated)
9.492
GRAVY (calculated)
-0.288
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTARTHHD ITSRDQYPLL GRDRDQYPYG RSDYQTSSQD YSKTRQIAKA ATAVTAGGSL LVLSSLTLVG TVIALTPGLS PLLVIFSPIL VPALITVALL
101: ITGFLSSGGF GIAAITVFSW IYKYATGEHP QGSDKLDSAR MKLGSKAQDI KDRAQYYGQQ HTGGEHDRDR TRGTHHNTT
101: ITGFLSSGGF GIAAITVFSW IYKYATGEHP QGSDKLDSAR MKLGSKAQDI KDRAQYYGQQ HTGGEHDRDR TRGTHHNTT
001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
Arabidopsis Description
OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.