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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, secretory
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
 endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH03819
KRH16003
KRH54801
KRH56699

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25140.1 KRH03819 AT3G18570.1 21798944
AT4G25140.1 KRH16003 AT3G18570.1 21798944
AT4G25140.1 KRH54801 AT3G18570.1 21798944
AT4G25140.1 KRH56699 AT3G18570.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH34604 Soybean endoplasmic reticulum 89.12 89.12
VIT_16s0013g00880.t01 Wine grape plasma membrane 60.54 61.81
Solyc06g034040.1.1 Tomato cytosol, golgi, plasma membrane, plastid 61.22 61.22
PGSC0003DMT400055585 Potato cytosol, endoplasmic reticulum, nucleus, plastid 61.22 60.81
GSMUA_Achr1P00500_001 Banana extracellular, golgi, plasma membrane 50.34 57.36
AT5G51210.1 Thale cress cytosol, golgi, plasma membrane 52.38 54.61
TraesCS2D01G414800.1 Wheat golgi 54.42 50.0
TraesCS2A01G417500.1 Wheat golgi 54.42 49.69
TraesCS2B01G436400.1 Wheat golgi, peroxisome, plasma membrane 53.74 49.38
Os04t0546500-01 Rice plastid 49.66 49.32
Zm00001d027258_P001 Maize endoplasmic reticulum, extracellular, vacuole 34.01 48.54
Bra035733.1-P Field mustard plasma membrane 48.98 48.32
CDX71696 Canola cytosol 48.98 48.32
CDY05844 Canola cytosol 48.98 48.32
Zm00001d002768_P001 Maize golgi, peroxisome, plasma membrane 51.02 48.08
EES12607 Sorghum golgi, peroxisome, plasma membrane 51.02 46.88
AT4G25140.1 Thale cress cytosol, golgi, plasma membrane 55.1 46.82
CDY03377 Canola cytosol 53.06 45.88
CDY34345 Canola cytosol 52.38 45.29
CDY24856 Canola cytosol 55.1 45.0
Bra010474.1-P Field mustard cytosol, golgi, plasma membrane 55.1 45.0
CDY08967 Canola cytosol, golgi, plasma membrane 54.42 44.69
CDY11058 Canola cytosol 53.06 42.62
Bra019186.1-P Field mustard cytosol, golgi, plasma membrane 52.38 41.85
CDX92679 Canola cytosol 52.38 41.4
Bra013866.1-P Field mustard cytosol, golgi, nucleus 53.06 40.0
TraesCS5B01G181700.1 Wheat golgi 43.54 38.32
KRH61966 Soybean endoplasmic reticulum, nucleus 43.54 38.1
TraesCS5D01G188400.1 Wheat golgi, peroxisome, plasma membrane 42.86 37.72
KXG40436 Sorghum cytosol, golgi, plasma membrane 42.86 37.72
HORVU5Hr1G056030.1 Barley golgi, peroxisome, plasma membrane 42.18 37.13
Os09t0324000-02 Rice plastid 37.41 34.81
KRH03243 Soybean golgi, plasma membrane, plastid, vacuole 33.33 30.62
KRH52626 Soybean endoplasmic reticulum 43.54 30.19
KRH03819 Soybean endoplasmic reticulum, nucleus 30.61 28.85
KRH16003 Soybean golgi, plasma membrane, vacuole 27.89 28.08
KRH56699 Soybean endoplasmic reticulum 29.93 26.99
KRG94116 Soybean nucleus 31.29 20.35
KRH07172 Soybean endoplasmic reticulum, nucleus 30.61 20.18
KRH54801 Soybean plasma membrane 25.17 19.37
KRG93234 Soybean nucleus 22.45 17.46
KRH56554 Soybean endoplasmic reticulum, nucleus 22.45 16.67
Protein Annotations
EMBL:ACUP02012735EnsemblPlants:KRG92187EnsemblPlantsGene:GLYMA_20G196600GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0012511GO:GO:0016020GO:GO:0016021InterPro:OleosinPANTHER:PTHR33203
PANTHER:PTHR33203:SF7PFAM:PF01277ProteinID:KRG92187ProteinID:KRG92187.1SEG:segTMHMM:TMhelix
UniParc:UPI000233DB41UniProt:A0A0R0EDR0MapMan:5.9.2:::
Description
hypothetical protein
Coordinates
chr20:+:43438213..43439011
Molecular Weight (calculated)
15754.1 Da
IEP (calculated)
7.807
GRAVY (calculated)
0.292
Length
147 amino acids
Sequence
(BLAST)
001: MAELHYQQQH QYPHRYPNDP YEQQTSYSTQ VVKAATAVTA GGSLLILASL ILAGTIIALT IVTPPLVIFS PVLVPAVITV ALLSLGFLAS GGFGVAAITV
101: LAWIYRYVTG KYPPGADQLD SAPHKIMDKA REIKDYGQQQ ISGVQAS
Best Arabidopsis Sequence Match ( AT4G25140.1 )
(BLAST)
001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
Arabidopsis Description
OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.