CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93234	Soybean	nucleus	67.17	70.37
VIT_14s0066g00700.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	29.8	42.14
Solyc12g010920.1.1	Tomato	cytosol, golgi, plasma membrane	36.36	41.86
PGSC0003DMT400032872	Potato	cytosol, golgi, plastid	34.34	40.96
Solyc02g086490.2.1	Tomato	extracellular	29.8	39.6
VIT_14s0066g00710.t01	Wine grape	golgi, plasma membrane, plastid	31.31	39.49
AT3G01570.1	Thale cress	plasma membrane	35.35	38.25
Bra039071.1-P	Field mustard	golgi, peroxisome, plasma membrane	35.35	37.23
CDY20040	Canola	cytosol	35.35	37.23
AT3G27660.1	Thale cress	cytosol, golgi, plasma membrane	35.86	37.17
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	27.27	36.24
Bra033021.1-P	Field mustard	golgi, peroxisome, plasma membrane	33.33	35.11
CDY49771	Canola	cytosol	33.33	35.11
CDY03988	Canola	cytosol, endoplasmic reticulum, golgi	33.84	35.08
KRG94116	Soybean	nucleus	39.9	34.96
Os03t0699000-01	Rice	plastid	29.8	34.3
AT5G40420.1	Thale cress	cytosol	34.34	34.17
KRH07172	Soybean	endoplasmic reticulum, nucleus	38.38	34.08
Zm00001d033612_P001	Maize	cytosol, golgi, plasma membrane	28.79	32.39
Zm00001d013494_P001	Maize	cytosol	30.3	32.26
CDX67456	Canola	cytosol	32.32	32.0
CDY11685	Canola	cytosol	31.82	31.5
Bra025577.1-P	Field mustard	cytosol, golgi, nucleus	33.84	30.45
Bra028458.1-P	Field mustard	golgi, nucleus, peroxisome	31.82	29.86
CDY50118	Canola	cytosol	32.32	27.95
KRH61966	Soybean	endoplasmic reticulum, nucleus	23.23	27.38
GSMUA_Achr4P13900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	24.75	25.79
KRH03243	Soybean	golgi, plasma membrane, plastid, vacuole	20.71	25.62
HORVU4Hr1G005800.1	Barley	plastid	30.3	25.1
KRH34604	Soybean	endoplasmic reticulum	17.68	23.81
KRH03819	Soybean	endoplasmic reticulum, nucleus	18.18	23.08
KXG37789	Sorghum	plastid	29.29	22.48
KRG92187	Soybean	nucleus	16.67	22.45
KRH56699	Soybean	endoplasmic reticulum	17.68	21.47
KRH52626	Soybean	endoplasmic reticulum	22.73	21.23
KRH16003	Soybean	golgi, plasma membrane, vacuole	12.63	17.12
KRH54801	Soybean	plasma membrane	15.66	16.23

Protein Annotations

MapMan:5.9.2	UniProt:A0A0R0JP17	EMBL:ACUP02002781	EnsemblPlantsGene:GLYMA_05G004300	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005811	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0010344	GO:GO:0012511	GO:GO:0016020
GO:GO:0016021	GO:GO:0019915	GO:GO:0050826	EnsemblPlants:KRH56554	ProteinID:KRH56554	ProteinID:KRH56554.1
InterPro:Oleosin	PFAM:PF01277	ScanProsite:PS00811	PANTHER:PTHR33203	PANTHER:PTHR33203:SF6	TMHMM:TMhelix
UniParc:UPI0006EDF4CD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:349459..350230

Molecular Weight (calculated)

21452.6 Da

IEP (calculated)

10.874

GRAVY (calculated)

0.198

Length

198 amino acids

Sequence
(BLAST)

001: MANLKLVPHA NPQLSILHAR VNTPKLHISM KHHRHYFNPT LRSQQQQPQH VQVHATTTHT PQHHGGEALL AGVPLGAMLL LLSGISLIAS LLGLAVATPL
101: FIFFSPLLVP AAFAIGMAVT AVLAAGACGL AGLVLFSWVV NYLRQMPRGT TMMTVLPEQA KRHVADMAEY VGQKTKEVGQ DIQTRAHHAQ GTTRMTVH

Best Arabidopsis Sequence Match ( AT3G01570.1 )
(BLAST)

001: MADVRTHSHQ LQVHPQRQHE GGIKVLYPQS GPSSTQVLAV FVGVPIGGTL LTIAGLTLAG SVIGLMLAFP LFLIFSPVIV PAAFVIGLAM TGFLASGAIG
101: LTGLSSMSWV LNYIRRAGQH IPEELEEAKH RLADMAEYVG QRTKDAGQTI EDKAHDVREA KTFDVRDRDT TKGTHNVRDT KTT

Arabidopsis Description

Oleosin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.