Factsheet for TraesCS5B01G181700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, peroxisome, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G415100.1
TraesCS1B01G445100.1
TraesCS1D01G422600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25140.1	TraesCS1A01G415100.1	AT3G18570.1	21798944
AT4G25140.1	TraesCS1B01G445100.1	AT3G18570.1	21798944
AT4G25140.1	TraesCS1D01G422600.1	AT3G18570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G188400.1	Wheat	golgi, peroxisome, plasma membrane	98.2	98.2
HORVU5Hr1G056030.1	Barley	golgi, peroxisome, plasma membrane	92.81	92.81
Os09t0324000-02	Rice	plastid	62.87	66.46
GSMUA_Achr1P00500_001	Banana	extracellular, golgi, plasma membrane	44.91	58.14
Zm00001d027258_P001	Maize	endoplasmic reticulum, extracellular, vacuole	35.33	57.28
KXG40436	Sorghum	cytosol, golgi, plasma membrane	56.29	56.29
TraesCS2B01G436400.1	Wheat	golgi, peroxisome, plasma membrane	52.1	54.38
VIT_16s0013g00880.t01	Wine grape	plasma membrane	42.52	49.31
Solyc06g034040.1.1	Tomato	cytosol, golgi, plasma membrane, plastid	39.52	44.9
PGSC0003DMT400055585	Potato	cytosol, endoplasmic reticulum, nucleus, plastid	38.92	43.92
KRG92187	Soybean	nucleus	38.32	43.54
KRH34604	Soybean	endoplasmic reticulum	37.72	42.86
CDY03377	Canola	cytosol	42.52	41.76
AT4G25140.1	Thale cress	cytosol, golgi, plasma membrane	42.52	41.04
CDY34345	Canola	cytosol	40.72	40.0
AT5G51210.1	Thale cress	cytosol, golgi, plasma membrane	33.53	39.72
CDY24856	Canola	cytosol	41.92	38.89
Bra010474.1-P	Field mustard	cytosol, golgi, plasma membrane	41.92	38.89
CDY05844	Canola	cytosol	34.13	38.26
Bra035733.1-P	Field mustard	plasma membrane	34.13	38.26
CDY08967	Canola	cytosol, golgi, plasma membrane	40.72	37.99
CDY11058	Canola	cytosol	41.32	37.7
CDX92679	Canola	cytosol	41.92	37.63
CDX71696	Canola	cytosol	33.53	37.58
Bra019186.1-P	Field mustard	cytosol, golgi, plasma membrane	41.32	37.5
Bra013866.1-P	Field mustard	cytosol, golgi, nucleus	40.72	34.87
TraesCS1B01G445100.1	Wheat	plasma membrane	25.75	25.75

Protein Annotations

EnsemblPlants:TraesCS5B01G181700.1	EnsemblPlantsGene:TraesCS5B01G181700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0012511	GO:GO:0016020	GO:GO:0016021	InterPro:Oleosin	PANTHER:PTHR33203	PANTHER:PTHR33203:SF1
PFAM:PF01277	ScanProsite:PS00811	SEG:seg	TMHMM:TMhelix	MapMan:5.9.2	:

Description

No Description!

Coordinates

chr5B:+:331279705..331280208

Molecular Weight (calculated)

16926.3 Da

IEP (calculated)

7.959

GRAVY (calculated)

0.286

Length

167 amino acids

Sequence
(BLAST)

001: MAGEQAFHRG GVHGGGSAIG PDYMRAIRGD DDYYGGHGQG YNQPATVTLA KGVAAAAAAG SMLLLSALTL TGTVLALIVA TPLLVLFSPV LVPAAIAVTM
101: LTAGFVSSGA FGAAAVGVLA WMYKYLSHGA SSPPGADTVD HAGAKLDSKA HEVKNWAQHR LDQARTP

Best Arabidopsis Sequence Match ( AT4G25140.1 )
(BLAST)

001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT

Arabidopsis Description

OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.