Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- golgi 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0643900-01 | |
| Os05t0576700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25140.1 | Os01t0643900-01 | AT3G18570.1 | 21798944 |
| AT4G25140.1 | Os05t0576700-01 | AT3G18570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002768_P001 | Maize | golgi, peroxisome, plasma membrane | 91.22 | 86.54 |
| EES12607 | Sorghum | golgi, peroxisome, plasma membrane | 90.54 | 83.75 |
| TraesCS2A01G417500.1 | Wheat | golgi | 87.16 | 80.12 |
| TraesCS2D01G414800.1 | Wheat | golgi | 86.49 | 80.0 |
| TraesCS2B01G436400.1 | Wheat | golgi, peroxisome, plasma membrane | 85.81 | 79.38 |
| GSMUA_Achr1P00500_001 | Banana | extracellular, golgi, plasma membrane | 66.22 | 75.97 |
| VIT_16s0013g00880.t01 | Wine grape | plasma membrane | 52.7 | 54.17 |
| Solyc06g034040.1.1 | Tomato | cytosol, golgi, plasma membrane, plastid | 52.7 | 53.06 |
| PGSC0003DMT400055585 | Potato | cytosol, endoplasmic reticulum, nucleus, plastid | 52.7 | 52.7 |
| KRG92187 | Soybean | nucleus | 49.32 | 49.66 |
| AT5G51210.1 | Thale cress | cytosol, golgi, plasma membrane | 47.3 | 49.65 |
| KRH34604 | Soybean | endoplasmic reticulum | 47.97 | 48.3 |
| Os09t0324000-02 | Rice | plastid | 50.68 | 47.47 |
| CDY03377 | Canola | cytosol | 50.68 | 44.12 |
| AT4G25140.1 | Thale cress | cytosol, golgi, plasma membrane | 51.35 | 43.93 |
| Bra035733.1-P | Field mustard | plasma membrane | 43.92 | 43.62 |
| CDY05844 | Canola | cytosol | 43.92 | 43.62 |
| CDY34345 | Canola | cytosol | 50.0 | 43.53 |
| CDX71696 | Canola | cytosol | 43.24 | 42.95 |
| CDY24856 | Canola | cytosol | 51.35 | 42.22 |
| Bra010474.1-P | Field mustard | cytosol, golgi, plasma membrane | 51.35 | 42.22 |
| CDY08967 | Canola | cytosol, golgi, plasma membrane | 50.0 | 41.34 |
| CDY11058 | Canola | cytosol | 49.32 | 39.89 |
| Bra019186.1-P | Field mustard | cytosol, golgi, plasma membrane | 49.32 | 39.67 |
| CDX92679 | Canola | cytosol | 49.32 | 39.25 |
| Bra013866.1-P | Field mustard | cytosol, golgi, nucleus | 50.0 | 37.95 |
| Os03t0699000-01 | Rice | plastid | 36.49 | 31.4 |
| Os05t0576700-01 | Rice | plastid | 32.43 | 27.75 |
| Os01t0643900-01 | Rice | golgi, nucleus, plasma membrane | 25.0 | 22.02 |
Protein Annotations
| EntrezGene:4336570 | MapMan:5.9.2 | EMBL:AF022148 | ProteinID:BAF15387.1 | ProteinID:BAS90341.1 | ProteinID:CAE02016.3 |
| ncoils:Coil | ProteinID:EAZ31530.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005811 | GO:GO:0008150 | GO:GO:0012511 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019915 |
| EMBL:JX134105 | EMBL:L76464 | InterPro:Oleosin | EnsemblPlantsGene:Os04g0546500 | EnsemblPlants:Os04t0546500-01 | PFAM:PF01277 |
| ScanProsite:PS00811 | PANTHER:PTHR33203 | PANTHER:PTHR33203:SF1 | UniProt:Q42980 | UniProt:S4U0K5 | TMHMM:TMhelix |
| EMBL:U25970 | EMBL:U43930 | UniParc:UPI0000130C6B | RefSeq:XP_015634024.1 | SEG:seg | : |
Description
16 kDa oleosin, endosperm-specific gene 72Similar to Oleosin. (Os04t0546500-01);Similar to Oleosin. (Os04t0546500-02)
Coordinates
chr4:-:27362093..27362951
Molecular Weight (calculated)
15200.6 Da
IEP (calculated)
9.927
GRAVY (calculated)
0.315
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQHRGVIG GGGYGDRGGQ EQQEKQPFMM TALKTVTAAT AGGSMLVLSG LILAGTVIAL TVATPVLVIF SPVLVPAAIA LALMAAGFVT SGGLGVAALS
101: VFSWMYKYLT GKHPPGADQL DHAKARLASK ARDIKEAAQH RIDQAQAS
101: VFSWMYKYLT GKHPPGADQL DHAKARLASK ARDIKEAAQH RIDQAQAS
001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT
Arabidopsis Description
OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.