CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, endoplasmic reticulum, mitochondrion, plastid, plasma membrane

Predictor Summary:

plastid 3
peroxisome 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014166.1-P	Field mustard	plastid	95.71	80.72
AT1G48990.1	Thale cress	plastid	74.29	61.54
CDX92248	Canola	golgi, plasma membrane, plastid, vacuole	57.86	49.09
CDX99345	Canola	golgi, plasma membrane, plastid, vacuole	56.43	47.88
PGSC0003DMT400014323	Potato	plastid	53.57	44.64
Solyc03g119820.1.1	Tomato	plastid	52.14	44.24
CDX82338	Canola	golgi, plasma membrane, vacuole	52.14	44.24
CDX75969	Canola	cytosol, golgi, plasma membrane, plastid	52.14	44.24
CDX95515	Canola	plasma membrane	50.71	43.29
CDY06745	Canola	plasma membrane	50.71	43.29
CDY18527	Canola	golgi, plasma membrane, plastid	50.0	42.68
KRH03819	Soybean	endoplasmic reticulum, nucleus	45.0	40.38
VIT_17s0000g04210.t01	Wine grape	plastid	45.71	39.75
KRH56699	Soybean	endoplasmic reticulum	45.0	38.65
GSMUA_Achr3P26330_001	Banana	plastid	44.29	37.35
PGSC0003DMT400010423	Potato	golgi, mitochondrion, plasma membrane, plastid	37.86	35.57
EES19991	Sorghum	golgi, mitochondrion, peroxisome, plastid	42.14	35.33
Zm00001d009648_P001	Maize	plasma membrane	38.57	34.39
KRH16003	Soybean	golgi, plasma membrane, vacuole	35.0	33.56
KRH54801	Soybean	plasma membrane	45.71	33.51
Os05t0576700-01	Rice	plastid	40.71	32.95
GSMUA_Achr1P11880_001	Banana	plastid	39.29	32.74
CDX77021	Canola	plasma membrane	33.57	32.41
CDY35326	Canola	plasma membrane	33.57	32.19
Solyc06g069260.1.1	Tomato	plasma membrane, plastid	35.0	32.03
TraesCS1A01G415100.1	Wheat	plasma membrane	34.29	28.74
HORVU1Hr1G091010.1	Barley	cytosol, golgi, plasma membrane	34.29	28.57
TraesCS1B01G445100.1	Wheat	plasma membrane	33.57	28.14
TraesCS1D01G422600.1	Wheat	plasma membrane	33.57	28.14
CDY08967	Canola	cytosol, golgi, plasma membrane	30.71	24.02
CDY24856	Canola	cytosol	30.71	23.89
CDY34345	Canola	cytosol	28.57	23.53
CDY03377	Canola	cytosol	28.57	23.53
CDY11058	Canola	cytosol	30.71	23.5
CDX71696	Canola	cytosol	25.0	23.49
CDX92679	Canola	cytosol	30.71	23.12
CDY05844	Canola	cytosol	24.29	22.82
OQU87227	Sorghum	plastid	31.43	22.8
Os01t0643900-01	Rice	golgi, nucleus, plasma membrane	27.14	22.62
Zm00001d044080_P001	Maize	plastid	27.86	20.86
CDY49771	Canola	cytosol	27.86	20.74
HORVU3Hr1G057690.1	Barley	plasma membrane	22.14	20.0
CDY03988	Canola	cytosol, endoplasmic reticulum, golgi	27.14	19.9
CDY20040	Canola	cytosol	25.71	19.15
CDY11685	Canola	cytosol	25.0	17.5
CDX67456	Canola	cytosol	25.0	17.5
CDY50118	Canola	cytosol	23.57	14.41

Protein Annotations

EnsemblPlants:CDX77269	EnsemblPlantsGene:GSBRNA2T00127984001	GO:A0A078CMK9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0012511	GO:GO:0016020	GO:GO:0016021	InterPro:Oleosin	PANTHER:PTHR33203
PANTHER:PTHR33203:SF4	PFAM:PF01277	ProteinID:CDX77269	ProteinID:CDX77269.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EB8EAA	MapMan:5.9.2	:	:	:	:

Description

BnaC08g03140D

Coordinates

chrLK031810:-:637238..637660

Molecular Weight (calculated)

15614.3 Da

IEP (calculated)

10.406

GRAVY (calculated)

0.513

Length

140 amino acids

Sequence
(BLAST)

001: MADRTSPSHI QQRLYGSTIA PPHGNNINHP IASFLRQLQS QSPEHSRQRF GLLAFFISCG ILLLLTGITL TAFVLGFIAF LPIIIISSPI WIPLFLLVTG
101: FLSVAGFLFS TAAVMSWMYR YFKGMHPVGS EQVDYARSRI

Best Arabidopsis Sequence Match ( AT1G48990.1 )
(BLAST)

001: MADRTNPSSH TQQRPIYNST TVPRSNTTTN HPLSSLLRQL LQSQSPNHSG QLFGFLAFFI SGGILLLLTG ITVTAFVLGF IAFLPLIIIS SPIWIPLFLI
101: VTGFLSLAGL ILATGAVVSW LYRYFKGMHP LRSDQVDYAR SRIHDTAAHV KDYAGGYFHG TLKDAAPGA

Arabidopsis Description

F27J15.22 [Source:UniProtKB/TrEMBL;Acc:Q9M9A1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.