Factsheet for PGSC0003DMT400046816

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112440.1.1	Tomato	golgi, plasma membrane, plastid	91.22	88.24
PGSC0003DMT400032872	Potato	cytosol, golgi, plastid	60.81	54.22
GSMUA_AchrUn_...	Banana	cytosol, golgi, plasma membrane	52.03	51.68
Os03t0699000-01	Rice	plastid	52.7	45.35
Zm00001d033612_P001	Maize	cytosol, golgi, plasma membrane	51.35	43.18
Zm00001d013494_P001	Maize	cytosol	53.38	42.47
GSMUA_Achr4P13900_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	51.35	40.0
PGSC0003DMT400055585	Potato	cytosol, endoplasmic reticulum, nucleus, plastid	36.49	36.49
PGSC0003DMT400062064	Potato	plasma membrane	31.76	35.07
PGSC0003DMT400067532	Potato	mitochondrion	33.11	35.0
PGSC0003DMT400065474	Potato	golgi, plasma membrane, vacuole	31.76	33.57
HORVU4Hr1G005800.1	Barley	plastid	54.05	33.47
KXG37789	Sorghum	plastid	52.7	30.23
PGSC0003DMT400014323	Potato	plastid	33.11	29.17
PGSC0003DMT400010423	Potato	golgi, mitochondrion, plasma membrane, plastid	26.35	26.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400046816	EnsemblPlantsGene:PGSC0003DMG400018176	EntrezGene:102604271	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005811	GO:GO:0012511	GO:GO:0016020	GO:GO:0016021	InterPro:Oleosin
PANTHER:PTHR33203	PANTHER:PTHR33203:SF6	PFAM:PF01277	PGSC:PGSC0003DMG400018176	RefSeq:XP_006344451.1	ScanProsite:PS00811
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002969F6E	UniProt:M1BJP0	MapMan:5.9.2	:

Description

Oleosin [Source:PGSC_GENE;Acc:PGSC0003DMG400018176]

Coordinates

chr3:+:52211805..52212667

Molecular Weight (calculated)

15759.6 Da

IEP (calculated)

11.066

GRAVY (calculated)

0.241

Length

148 amino acids

Sequence
(BLAST)

001: MAEQQSRTQQ QQQQQQMQVQ PTEAIKSLLP QKGPSKSQIL AVVTLFPVGG ALLCLAGLTL VGTVIGLAVA TPVFLLFSPV LVPAALTIAL AVTGFLTSGA
101: FGITALSALS WMINYMRKMR GTAGEQMEHA KRRVQEAAGH MGQRTAQK

Best Arabidopsis Sequence Match ( AT3G01570.1 )
(BLAST)

001: MADVRTHSHQ LQVHPQRQHE GGIKVLYPQS GPSSTQVLAV FVGVPIGGTL LTIAGLTLAG SVIGLMLAFP LFLIFSPVIV PAAFVIGLAM TGFLASGAIG
101: LTGLSSMSWV LNYIRRAGQH IPEELEEAKH RLADMAEYVG QRTKDAGQTI EDKAHDVREA KTFDVRDRDT TKGTHNVRDT KTT

Arabidopsis Description

Oleosin 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS98]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.