Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014166.1-P | Field mustard | plastid | 83.23 | 80.72 |
| AT1G48990.1 | Thale cress | plastid | 81.99 | 78.11 |
| Bra022333.1-P | Field mustard | golgi, plasma membrane, plastid, vacuole | 66.46 | 64.85 |
| PGSC0003DMT400014323 | Potato | plastid | 59.63 | 57.14 |
| Bra037577.1-P | Field mustard | golgi, plasma membrane, plastid | 57.76 | 56.71 |
| Solyc03g119820.1.1 | Tomato | plastid | 57.14 | 55.76 |
| Bra001711.1-P | Field mustard | golgi, plasma membrane, vacuole | 60.87 | 55.68 |
| KRH03819 | Soybean | endoplasmic reticulum, nucleus | 51.55 | 53.21 |
| VIT_17s0000g04210.t01 | Wine grape | plastid | 52.8 | 52.8 |
| KRH56699 | Soybean | endoplasmic reticulum | 52.8 | 52.15 |
| GSMUA_Achr3P26330_001 | Banana | plastid | 50.93 | 49.4 |
| PGSC0003DMT400010423 | Potato | golgi, mitochondrion, plasma membrane, plastid | 45.34 | 48.99 |
| EES19991 | Sorghum | golgi, mitochondrion, peroxisome, plastid | 47.83 | 46.11 |
| Zm00001d009648_P001 | Maize | plasma membrane | 44.1 | 45.22 |
| KRH16003 | Soybean | golgi, plasma membrane, vacuole | 40.37 | 44.52 |
| Os05t0576700-01 | Rice | plastid | 47.83 | 44.51 |
| Solyc06g069260.1.1 | Tomato | plasma membrane, plastid | 42.24 | 44.44 |
| GSMUA_Achr1P11880_001 | Banana | plastid | 44.72 | 42.86 |
| TraesCS1B01G445100.1 | Wheat | plasma membrane | 41.61 | 40.12 |
| TraesCS1A01G415100.1 | Wheat | plasma membrane | 41.61 | 40.12 |
| TraesCS1D01G422600.1 | Wheat | plasma membrane | 41.61 | 40.12 |
| HORVU1Hr1G091010.1 | Barley | cytosol, golgi, plasma membrane | 40.99 | 39.29 |
| KRH54801 | Soybean | plasma membrane | 45.34 | 38.22 |
| Bra034280.1-P | Field mustard | plasma membrane | 29.81 | 32.88 |
| Os01t0643900-01 | Rice | golgi, nucleus, plasma membrane | 32.3 | 30.95 |
| OQU87227 | Sorghum | plastid | 34.16 | 28.5 |
| Zm00001d044080_P001 | Maize | plastid | 32.3 | 27.81 |
| HORVU3Hr1G057690.1 | Barley | plasma membrane | 24.84 | 25.81 |
| Bra010474.1-P | Field mustard | cytosol, golgi, plasma membrane | 28.57 | 25.56 |
| Bra019186.1-P | Field mustard | cytosol, golgi, plasma membrane | 27.95 | 24.46 |
| Bra035733.1-P | Field mustard | plasma membrane | 22.36 | 24.16 |
| Bra013866.1-P | Field mustard | cytosol, golgi, nucleus | 26.71 | 22.05 |
| Bra039071.1-P | Field mustard | golgi, peroxisome, plasma membrane | 25.47 | 21.81 |
| Bra033021.1-P | Field mustard | golgi, peroxisome, plasma membrane | 25.47 | 21.81 |
| Bra025577.1-P | Field mustard | cytosol, golgi, nucleus | 25.47 | 18.64 |
| Bra028458.1-P | Field mustard | golgi, nucleus, peroxisome | 23.6 | 18.01 |
Protein Annotations
| EnsemblPlants:Bra018770.1 | EnsemblPlants:Bra018770.1-P | EnsemblPlantsGene:Bra018770 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0012511 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Oleosin | PANTHER:PTHR33203 |
| PANTHER:PTHR33203:SF4 | PFAM:PF01277 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253EC50 | UniProt:M4DQH7 |
| MapMan:5.9.2 | : | : | : | : | : |
Description
AT1G48990 (E=4e-042) | glycine-rich protein / oleosin
Coordinates
chrA06:-:2085436..2085921
Molecular Weight (calculated)
17423.3 Da
IEP (calculated)
10.134
GRAVY (calculated)
0.461
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDIQHRPV YGSTTVPRST NINNPVASFL RQLQSKAPNH SGQLFGLLAF FISGGILLLL TGITVTAFVL GFIAFLPIII ISSPIWIPLF LLVTGFLSLA
101: GMVFGTAALI SWTYRYFKGM HPVGSDQVDY ARSRIFDTAA HVKDYAGGYF HGKQKDAAPG A
101: GMVFGTAALI SWTYRYFKGM HPVGSDQVDY ARSRIFDTAA HVKDYAGGYF HGKQKDAAPG A
001: MADRTNPSSH TQQRPIYNST TVPRSNTTTN HPLSSLLRQL LQSQSPNHSG QLFGFLAFFI SGGILLLLTG ITVTAFVLGF IAFLPLIIIS SPIWIPLFLI
101: VTGFLSLAGL ILATGAVVSW LYRYFKGMHP LRSDQVDYAR SRIHDTAAHV KDYAGGYFHG TLKDAAPGA
101: VTGFLSLAGL ILATGAVVSW LYRYFKGMHP LRSDQVDYAR SRIHDTAAHV KDYAGGYFHG TLKDAAPGA
Arabidopsis Description
F27J15.22 [Source:UniProtKB/TrEMBL;Acc:Q9M9A1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.