Factsheet for VIT_16s0050g01050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0499g00020.t01
VIT_01s0026g01970.t01
VIT_01s0127g00450.t01
VIT_02s0012g01860.t01
VIT_03s0091g00480.t01
VIT_04s0008g01380.t01
VIT_04s0008g07260.t01
VIT_07s0005g01100.t01
VIT_08s0007g01720.t01
VIT_09s0002g02400.t01
VIT_10s0003g03090.t01
VIT_11s0078g00180.t01
VIT_12s0028g00830.t01
VIT_14s0060g01340.t01
VIT_16s0013g00170.t01
VIT_16s0013g01410.t01
VIT_16s0050g01050.t01
VIT_18s0001g05440.t01
VIT_18s0001g05960.t01
VIT_18s0001g10590.t01
VIT_19s0014g05110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25660.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944
AT4G25660.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT4G25660.1	VIT_09s0002g02400.t01	AT1G55190.1	21798944
AT4G25660.1	VIT_18s0001g05960.t01	AT1G71480.1	21798944
AT4G25660.1	VIT_18s0001g05440.t01	AT1G78140.1	21798944
AT4G25660.1	VIT_12s0028g00830.t01	AT2G30880.1	21798944
AT4G25660.1	VIT_10s0003g03090.t01	AT2G34460.1	21798944
AT4G25660.1	VIT_09s0002g02400.t01	AT3G13710.1	21798944
AT4G25660.1	VIT_19s0014g05110.t01	AT3G20680.1	21798944
AT4G25660.1	VIT_08s0007g01720.t01	AT3G54120.1	21798944
AT4G25660.1	VIT_14s0060g01340.t01	AT4G02080.1	21798944
AT4G25660.1	VIT_16s0013g00170.t01	AT4G02080.1	21798944
AT4G25660.1	VIT_07s0005g01100.t01	AT4G02150.1	21798944
AT4G25660.1	VIT_02s0012g01860.t01	AT4G17720.1	21798944
AT4G25660.1	VIT_01s0127g00450.t01	AT4G22220.1	21798944
AT4G25660.1	VIT_16s0050g01050.t01	AT4G25660.1	21798944
AT4G25660.1	VIT_11s0078g00180.t01	AT5G09450.1	21798944
AT4G25660.1	VIT_04s0008g01380.t01	AT5G12010.1	21798944
AT4G25660.1	VIT_00s0499g00020.t01	AT5G16250.1	21798944
AT4G25660.1	VIT_04s0008g07260.t01	AT5G24990.1	21798944
AT4G25660.1	VIT_16s0013g01410.t01	AT5G51180.1	21798944
AT4G25680.1	VIT_14s0060g01340.t01	AT1G56330.1	21798944
AT4G25680.1	VIT_16s0013g00170.t01	AT1G56330.1	21798944
AT4G25680.1	VIT_12s0028g00830.t01	AT2G30880.1	21798944
AT4G25680.1	VIT_09s0002g02400.t01	AT3G13710.1	21798944
AT4G25680.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944
AT4G25680.1	VIT_16s0050g01050.t01	AT4G25660.1	21798944
AT4G25680.1	VIT_16s0050g01050.t01	AT4G25680.1	21798944
AT4G25680.1	VIT_18s0001g10590.t01	AT4G33350.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g008010.2.1	Tomato	cytosol	77.37	79.32
KRH08874	Soybean	cytosol	79.42	78.78
PGSC0003DMT400026255	Potato	cytosol	76.13	78.06
KRH38387	Soybean	cytosol	78.6	77.02
GSMUA_Achr8P12230_001	Banana	cytosol	72.84	71.95
GSMUA_Achr11P...	Banana	cytosol	72.43	71.26
Solyc03g034310.1.1	Tomato	cytosol	24.69	69.77
CDX94426	Canola	cytosol	71.19	68.65
Zm00001d029725_P001	Maize	extracellular, mitochondrion	69.14	68.57
CDX89402	Canola	cytosol	69.96	67.73
Bra013910.1-P	Field mustard	cytosol	69.55	67.33
Os10t0533900-01	Rice	cytosol, nucleus, peroxisome	67.9	67.07
TraesCS1B01G205700.1	Wheat	cytosol, peroxisome, plastid	66.67	66.94
EER94588	Sorghum	cytosol	67.49	66.94
HORVU1Hr1G049520.3	Barley	cytosol, peroxisome, plastid	66.67	66.67
AT4G25680.1	Thale cress	cytosol	68.31	65.87
Bra010452.1-P	Field mustard	cytosol	68.72	65.75
CDY66007	Canola	cytosol	68.72	65.75
AT4G25660.1	Thale cress	cytosol	68.72	65.49
CDY49480	Canola	cytosol	67.49	64.82
CDX94429	Canola	cytosol	65.02	64.49
CDX89404	Canola	cytosol	65.02	64.49
Bra013908.1-P	Field mustard	cytosol	64.61	64.08
GSMUA_AchrUn_...	Banana	cytosol	62.14	60.89
TraesCS1A01G184300.1	Wheat	cytosol	66.67	57.86
TraesCS1D01G192400.1	Wheat	cytosol, peroxisome, plastid	66.67	57.65
HORVU1Hr1G049510.1	Barley	cytosol	29.63	53.73
EER87703	Sorghum	cytosol	56.79	51.49
Os06t0107000-01	Rice	cytosol, nucleus	55.56	50.0
GSMUA_Achr11P...	Banana	cytosol	41.98	50.0
Zm00001d045580_P001	Maize	cytosol	55.14	50.0
TraesCS7A01G019000.1	Wheat	cytosol	56.79	46.94
HORVU7Hr1G002080.2	Barley	cytosol	37.45	46.19
TraesCSU01G065800.1	Wheat	cytosol	55.97	45.95
TraesCS7D01G016100.1	Wheat	nucleus	56.38	42.15
VIT_04s0008g05960.t01	Wine grape	mitochondrion	27.57	29.65
VIT_09s0002g08960.t01	Wine grape	plasma membrane	24.69	26.2
VIT_11s0016g04860.t01	Wine grape	cytosol, nucleus, peroxisome	23.05	26.17
VIT_18s0001g12090.t01	Wine grape	mitochondrion	23.46	23.08
VIT_03s0063g02130.t01	Wine grape	mitochondrion	23.46	17.01
VIT_18s0072g01100.t01	Wine grape	cytosol	7.82	13.77

Protein Annotations

EntrezGene:100255969	wikigene:100255969	MapMan:19.4.1.7	Gene3D:3.90.1720.30	ProteinID:CBI22663	ProteinID:CBI22663.3
UniProt:E0CUW3	EMBL:FN595243	EntrezGene:LOC100255969	wikigene:LOC100255969	PFAM:PF05903	InterPro:PPPDE_dom
PANTHER:PTHR12378	PANTHER:PTHR12378:SF9	SMART:SM01179	TIGR:TC62347	TIGR:TC67207	UniParc:UPI00015CBE21
ArrayExpress:VIT_16s0050g01050	EnsemblPlantsGene:VIT_16s0050g01050	EnsemblPlants:VIT_16s0050g01050.t01	unigene:Vvi.12249	RefSeq:XP_002273259	RefSeq:XP_002273259.1

Description

No Description!

Coordinates

chr16:+:17979707..17985103

Molecular Weight (calculated)

26750.5 Da

IEP (calculated)

6.901

GRAVY (calculated)

-0.316

Length

243 amino acids

Sequence
(BLAST)

001: MEVVLHIYDV TNSGSEKTNN TIVQINKIFK DGIGLGGIFH SAVQVYGDDE WSFGFCEQGT GVFSCPASKN PMYTYRECIV LGRTNFSIFK VNQILRELSR
101: EWPGSSYDLL AKNCNHFCDE LCEKLGVPKL PGWVNRFANA GDAAMEVAGN TALRFRQAKT EIVTASKVAY RFLLGVTSNS AVTPESPSNS NRATPRFQGA
201: WFKSLVPSGA TGARPSSSSE IENQEDVVRQ QPLHEAEAPL RQT

Best Arabidopsis Sequence Match ( AT4G25660.1 )
(BLAST)

001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ

Arabidopsis Description

At4g25660 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.