Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0026g01970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51180.1 | VIT_01s0026g01970.t01 | AT1G14340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g052020.2.1 | Tomato | cytosol | 71.84 | 68.68 |
| PGSC0003DMT400069125 | Potato | cytosol | 71.26 | 68.13 |
| KRG90131 | Soybean | cytosol | 68.39 | 66.85 |
| PGSC0003DMT400027928 | Potato | nucleus | 68.97 | 66.67 |
| Solyc03g093510.2.1 | Tomato | nucleus | 68.97 | 66.48 |
| KRH33381 | Soybean | cytosol | 67.82 | 66.11 |
| CDY05841 | Canola | cytosol | 63.79 | 65.49 |
| GSMUA_Achr5P15490_001 | Banana | cytosol | 60.34 | 65.22 |
| Bra035731.1-P | Field mustard | cytosol | 64.08 | 65.2 |
| GSMUA_Achr4P28970_001 | Banana | cytosol | 66.38 | 64.89 |
| CDX71694 | Canola | cytosol | 65.8 | 64.87 |
| GSMUA_Achr7P06920_001 | Banana | cytosol | 59.77 | 64.4 |
| GSMUA_Achr2P12000_001 | Banana | cytosol | 63.22 | 63.95 |
| AT5G51180.1 | Thale cress | cytoskeleton, cytosol, nucleus | 64.08 | 62.47 |
| EES05791 | Sorghum | cytosol | 60.06 | 60.58 |
| TraesCS7D01G302900.1 | Wheat | cytoskeleton, cytosol, nucleus | 59.48 | 58.81 |
| TraesCS6D01G226000.1 | Wheat | cytosol | 59.48 | 58.81 |
| Zm00001d017470_P001 | Maize | cytosol | 60.06 | 58.71 |
| TraesCS7A01G306200.1 | Wheat | cytosol | 59.2 | 58.36 |
| Os08t0143700-01 | Rice | cytoskeleton, cytosol, nucleus | 58.62 | 58.29 |
| OQU79861 | Sorghum | cytosol | 59.2 | 58.19 |
| TraesCS7B01G206400.1 | Wheat | cytosol | 58.91 | 58.07 |
| TraesCS6A01G243800.1 | Wheat | cytosol | 58.33 | 58.0 |
| HORVU6Hr1G062800.5 | Barley | cytosol | 59.2 | 57.7 |
| TraesCS6B01G280500.1 | Wheat | cytoskeleton, cytosol, nucleus | 58.62 | 57.63 |
| Zm00001d024645_P001 | Maize | cytosol | 57.47 | 51.95 |
| HORVU7Hr1G072940.6 | Barley | plastid | 58.33 | 50.88 |
| Os02t0655600-01 | Rice | cytosol | 19.25 | 48.55 |
| VIT_11s0052g01660.t01 | Wine grape | plastid | 51.72 | 44.66 |
| VIT_18s0001g08360.t01 | Wine grape | nucleus | 48.56 | 41.42 |
| VIT_10s0003g01230.t01 | Wine grape | cytosol | 38.79 | 36.59 |
Protein Annotations
| EntrezGene:100257840 | wikigene:100257840 | Gene3D:3.40.50.1820 | MapMan:35.2 | InterPro:AB_hydrolase | ProteinID:CCB61234 |
| ProteinID:CCB61234.1 | InterPro:DUF676_lipase-like | UniProt:F6I2R7 | EMBL:FN596738 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0044255 |
| GO:GO:0052689 | InterPro:IPR029058 | EntrezGene:LOC100257840 | wikigene:LOC100257840 | PFAM:PF05057 | PANTHER:PTHR12482 |
| PANTHER:PTHR12482:SF14 | SUPFAM:SSF53474 | UniParc:UPI0002109EDC | ArrayExpress:VIT_16s0013g01410 | EnsemblPlantsGene:VIT_16s0013g01410 | EnsemblPlants:VIT_16s0013g01410.t01 |
| unigene:Vvi.2239 | RefSeq:XP_002264100 | RefSeq:XP_002264100.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr16:-:8002512..8010964
Molecular Weight (calculated)
39165.5 Da
IEP (calculated)
5.281
GRAVY (calculated)
-0.277
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDGPVENGI CSSESIHGGT DVWSSKESAT ASADHLVVMV HGILGSVTDW KFAAEQFVRI LPDKVIVHRS ERNASMLTLD GVDVMGERLA EEVIEVIKQK
101: PEVRKISFVS HSVGGLVARY AIGRLYRPPR SENEDDPSDN ICEENSRGTI YGLEAMNFIT VATPHLGSRG NKQVPFLFGV PVFEKAATSV IHLIFRRTGR
201: HLFLTDDDEG NPPLLRRMIE DCGELHFMSA LHTFTRRVIY SNVGYDHIVG WRTSSIRRNS ELPKWEDVVN EKYPHIVFEE HCKACDAEQC EPSSMEDDGL
301: DKLEEELLMG LSCVSWEKVD VSFHACRQRF AAHSVIQSDL LDQPLWIS
101: PEVRKISFVS HSVGGLVARY AIGRLYRPPR SENEDDPSDN ICEENSRGTI YGLEAMNFIT VATPHLGSRG NKQVPFLFGV PVFEKAATSV IHLIFRRTGR
201: HLFLTDDDEG NPPLLRRMIE DCGELHFMSA LHTFTRRVIY SNVGYDHIVG WRTSSIRRNS ELPKWEDVVN EKYPHIVFEE HCKACDAEQC EPSSMEDDGL
301: DKLEEELLMG LSCVSWEKVD VSFHACRQRF AAHSVIQSDL LDQPLWIS
001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
Arabidopsis Description
AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.