Factsheet for TraesCS7D01G302900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51180.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT5G51180.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT5G51180.1	TraesCS2D01G523400.1	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G306200.1	Wheat	cytosol	99.43	99.15
TraesCS7B01G206400.1	Wheat	cytosol	99.15	98.87
Os08t0143700-01	Rice	cytoskeleton, cytosol, nucleus	82.95	83.43
OQU79861	Sorghum	cytosol	82.1	81.64
HORVU7Hr1G072940.6	Barley	plastid	90.06	79.45
Zm00001d024645_P001	Maize	cytosol	78.69	71.95
CDY05841	Canola	cytosol	61.36	63.72
Bra035731.1-P	Field mustard	cytosol	61.65	63.45
AT5G51180.1	Thale cress	cytoskeleton, cytosol, nucleus	64.2	63.31
CDX71694	Canola	cytosol	61.93	61.76
KRG90131	Soybean	cytosol	61.93	61.24
KRH33381	Soybean	cytosol	61.36	60.5
TraesCS6D01G226000.1	Wheat	cytosol	59.94	59.94
Solyc05g052020.2.1	Tomato	cytosol	61.93	59.89
PGSC0003DMT400027928	Potato	nucleus	61.08	59.72
PGSC0003DMT400069125	Potato	cytosol	61.65	59.62
Solyc03g093510.2.1	Tomato	nucleus	61.08	59.56
VIT_16s0013g01410.t01	Wine grape	cytosol	58.81	59.48
TraesCS4D01G057800.2	Wheat	mitochondrion	47.16	42.56
TraesCS7D01G281400.3	Wheat	plastid	48.58	39.58
TraesCS6D01G329100.1	Wheat	plastid	50.0	38.6
TraesCS7D01G105700.1	Wheat	plastid	43.18	35.27
TraesCS5D01G148300.1	Wheat	mitochondrion	14.77	32.7

Protein Annotations

EnsemblPlants:TraesCS7D01G302900.1	EnsemblPlantsGene:TraesCS7D01G302900	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:DUF676_lipase-like	InterPro:IPR029058
PANTHER:PTHR12482	PANTHER:PTHR12482:SF14	PFAM:PF05057	SEG:seg	SUPFAM:SSF53474	MapMan:35.2

Description

No Description!

Coordinates

chr7D:+:383216481..383225018

Molecular Weight (calculated)

39406.8 Da

IEP (calculated)

5.532

GRAVY (calculated)

-0.183

Length

352 amino acids

Sequence
(BLAST)

001: MAGASGSVEE EGGLRAEESP SGGVDVWSDA VSSHAPEHLL VMVHGILGST NDWQYAANEF VKQLPDDVIV HCSEKNMNTL TLDGVDVMGE RLADEVLDVI
101: SRKPELTKIS FLAHSVGGLV ARYAIAKLYR HPNSTFDSKA EGTICGLEAV NFITVATPHL GSRGNKQVPL LFGFITIEKV ASRVIHWIFR RTGRHLFLTD
201: SAEGEPPLLQ RMVEDYGNLY FISALRAFKR RVAYANAGCD HIVGWRTSSI RRNTELPKWE ESVCEKYPHI VHEEYSEEIS DEKCQDLAAD CDFDLLEEKM
301: VTGLRRVSWE KVDVSFHTSM RSFAAHSIIQ VKYAFMNEGA DVIQHIIDHF QL

Best Arabidopsis Sequence Match ( AT5G51180.1 )
(BLAST)

001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA

Arabidopsis Description

AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.