Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51180.1 | CDX84035 | AT1G14340.1 | 21798944 |
| AT5G51180.1 | CDX96860 | AT1G14340.1 | 21798944 |
| AT5G51180.1 | CDY49093 | AT1G14340.1 | 21798944 |
| AT5G51180.1 | CDY62016 | AT1G14340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05841 | Canola | cytosol | 94.33 | 98.23 |
| AT5G51180.1 | Thale cress | cytoskeleton, cytosol, nucleus | 86.69 | 85.71 |
| PGSC0003DMT400027928 | Potato | nucleus | 69.12 | 67.78 |
| Solyc03g093510.2.1 | Tomato | nucleus | 68.84 | 67.31 |
| GSMUA_Achr5P15490_001 | Banana | cytosol | 60.62 | 66.46 |
| GSMUA_Achr7P06920_001 | Banana | cytosol | 60.34 | 65.94 |
| VIT_16s0013g01410.t01 | Wine grape | cytosol | 64.87 | 65.8 |
| KRG90131 | Soybean | cytosol | 66.29 | 65.73 |
| KRH33381 | Soybean | cytosol | 66.01 | 65.27 |
| PGSC0003DMT400069125 | Potato | cytosol | 66.57 | 64.56 |
| GSMUA_Achr4P28970_001 | Banana | cytosol | 64.59 | 64.04 |
| Solyc05g052020.2.1 | Tomato | cytosol | 66.01 | 64.01 |
| GSMUA_Achr2P12000_001 | Banana | cytosol | 62.32 | 63.95 |
| OQU79861 | Sorghum | cytosol | 63.74 | 63.56 |
| EES05791 | Sorghum | cytosol | 61.19 | 62.61 |
| TraesCS7D01G302900.1 | Wheat | cytoskeleton, cytosol, nucleus | 61.76 | 61.93 |
| TraesCS7A01G306200.1 | Wheat | cytosol | 61.76 | 61.76 |
| TraesCS7B01G206400.1 | Wheat | cytosol | 61.47 | 61.47 |
| Os08t0143700-01 | Rice | cytoskeleton, cytosol, nucleus | 59.77 | 60.29 |
| TraesCS6D01G226000.1 | Wheat | cytosol | 60.06 | 60.23 |
| Zm00001d017470_P001 | Maize | cytosol | 60.62 | 60.11 |
| TraesCS6A01G243800.1 | Wheat | cytosol | 58.92 | 59.43 |
| TraesCS6B01G280500.1 | Wheat | cytoskeleton, cytosol, nucleus | 59.21 | 59.04 |
| HORVU6Hr1G062800.5 | Barley | cytosol | 59.49 | 58.82 |
| Zm00001d024645_P001 | Maize | cytosol | 62.32 | 57.14 |
| HORVU7Hr1G072940.6 | Barley | plastid | 57.79 | 51.13 |
| Os02t0655600-01 | Rice | cytosol | 18.41 | 47.1 |
| CDY31052 | Canola | nucleus | 47.59 | 44.92 |
| CDY20663 | Canola | nucleus | 47.59 | 43.98 |
| CDY68099 | Canola | plastid | 49.86 | 43.46 |
| CDX94416 | Canola | plastid | 49.58 | 42.79 |
| CDY15650 | Canola | cytosol | 30.31 | 41.15 |
| CDX81158 | Canola | cytosol | 18.13 | 34.04 |
| CDX90168 | Canola | plastid | 39.66 | 31.46 |
| CDY43318 | Canola | plastid | 39.66 | 31.39 |
| CDX98042 | Canola | cytosol | 12.18 | 14.53 |
Protein Annotations
| EnsemblPlants:CDX71694 | EnsemblPlantsGene:GSBRNA2T00152375001 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:DUF676_lipase-like | InterPro:IPR029058 |
| PANTHER:PTHR12482 | PANTHER:PTHR12482:SF14 | PFAM:PF05057 | ProteinID:CDX71694 | ProteinID:CDX71694.1 | SUPFAM:SSF53474 |
| UniParc:UPI0004EC3419 | MapMan:35.2 | : | : | : | : |
Description
BnaC09g27350D
Coordinates
chrLK031794:+:3131865..3134605
Molecular Weight (calculated)
39354.5 Da
IEP (calculated)
5.395
GRAVY (calculated)
-0.331
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQEEGVCS AESVVDGSLD VWSCKNSDSS SADHLVVMVH GILGSTDDWK FGAEQFVKRL PDKLFVHCSE KNASALTLDG VDVMGERLAS EVLEIVETRP
101: NIRKISFVAH SLGGLAARYA IGKLYKPPNP QDSSGDSIEG PSQGTICGLE AVNFITVATP HLGSMGNRQV PFLFGVSSFE KVAGLVIHWI FKRTGRHLFL
201: KDEEEGKPPL LRRMVEDTGD CHFMSALRAF KRRVVYSNVG HDHIVGWRTA SIRRDSELPK WEDSLDEKYP HIVYEELCKS CDGDDVPEGE NHSDDIEEEM
301: IKGLSTVSWE KVDVSFHSSR QRFAAHSVIQ VKSETMHIEG ADVIEHIIDH FHP
101: NIRKISFVAH SLGGLAARYA IGKLYKPPNP QDSSGDSIEG PSQGTICGLE AVNFITVATP HLGSMGNRQV PFLFGVSSFE KVAGLVIHWI FKRTGRHLFL
201: KDEEEGKPPL LRRMVEDTGD CHFMSALRAF KRRVVYSNVG HDHIVGWRTA SIRRDSELPK WEDSLDEKYP HIVYEELCKS CDGDDVPEGE NHSDDIEEEM
301: IKGLSTVSWE KVDVSFHSSR QRFAAHSVIQ VKSETMHIEG ADVIEHIIDH FHP
001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA
Arabidopsis Description
AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.