CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51180.1	EES12950	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017470_P001	Maize	cytosol	94.2	91.29
TraesCS6A01G243800.1	Wheat	cytosol	80.87	79.71
TraesCS6D01G226000.1	Wheat	cytosol	81.16	79.55
TraesCS6B01G280500.1	Wheat	cytoskeleton, cytosol, nucleus	80.29	78.25
HORVU6Hr1G062800.5	Barley	cytosol	80.58	77.87
GSMUA_Achr5P15490_001	Banana	cytosol	63.19	67.7
CDY05841	Canola	cytosol	62.32	63.42
Bra035731.1-P	Field mustard	cytosol	62.32	62.87
PGSC0003DMT400069125	Potato	cytosol	64.64	61.26
CDX71694	Canola	cytosol	62.61	61.19
PGSC0003DMT400027928	Potato	nucleus	62.9	60.28
Solyc05g052020.2.1	Tomato	cytosol	63.48	60.16
Os02t0655600-01	Rice	cytosol	24.06	60.14
VIT_16s0013g01410.t01	Wine grape	cytosol	60.58	60.06
Solyc03g093510.2.1	Tomato	nucleus	62.32	59.56
KRG90131	Soybean	cytosol	61.45	59.55
AT5G51180.1	Thale cress	cytoskeleton, cytosol, nucleus	61.45	59.38
OQU79861	Sorghum	cytosol	60.29	58.76
KRH33381	Soybean	cytosol	60.58	58.54
KXG37661	Sorghum	nucleus	49.57	44.3
KXG25255	Sorghum	plastid	53.91	43.76
KXG31240	Sorghum	plastid	51.59	39.29
KXG19329	Sorghum	plastid	41.16	32.05

Protein Annotations

Gene3D:3.40.50.1820	MapMan:35.2	EntrezGene:8073964	InterPro:AB_hydrolase	UniProt:C5XRZ5	InterPro:DUF676_lipase-like
EnsemblPlants:EES05791	ProteinID:EES05791	ProteinID:EES05791.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0044255	GO:GO:0052689
InterPro:IPR029058	PFAM:PF05057	PANTHER:PTHR12482	PANTHER:PTHR12482:SF37	EnsemblPlantsGene:SORBI_3004G296500	SUPFAM:SSF53474
unigene:Sbi.7458	UniParc:UPI0001A85FCE	RefSeq:XP_002452815.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:63619435..63624432

Molecular Weight (calculated)

38372.8 Da

IEP (calculated)

7.138

GRAVY (calculated)

-0.322

Length

345 amino acids

Sequence
(BLAST)

001: MGDLGGGDWR EAVAEKGPAE AAAGPDHLVV MVHGIVGSTA DWKFGAEQFD KLLSDKVIVH CSNRNMHKLT LDGVDVMGER LAQEVIEEIN RRPYIKKISF
101: VAHSVGGLVA RYAIGRLYKS PKPTSENTPQ TPDDNNRGTI HGLEAVNFIT VASPHLGSRG NKQVPFLFGV TAIENFACHI IHLIFGRTGK HLFLADNNDG
201: KPPLLQRMVD NWGDLQFMSA LQAFKRRVAY SNVGHDHIVG WRTSSIRKDS ELPKWADSTN KIYPHIVYEE LSKSEVPNQC ADTDNCTLEE RLLQGLKRVS
301: WEKVDVSFHN SKVRSAAHSV IQVKDPVMHS DGADVIQHMI DQFIL

Best Arabidopsis Sequence Match ( AT5G51180.1 )
(BLAST)

001: MEKHEEENGL CKAESVDGSL DVWSCQNSDS SSADHLVVMV HGILGSTDDW KFGAEQFVKK MPDKVFVHCS EKNVSALTLD GVDVMGERLA AEVLDIIQRK
101: PNICKISFVA HSLGGLAARY AIGKLYKPAN QEDVKDSVAD SSQETPKGTI CGLEAMNFIT VATPHLGSMG NKQVPFLFGF SSIEKVAGLI IHWIFKRTGR
201: HLFLKDEEEG KPPLLRRMVE DTDDCHFISA LRAFKRRVAY SNVGHDHVVG WKTASIRRDS ELPKWEDSLN EKYPHIVYEE LCKACDMEDI PEGENHSDDI
301: EEEMIKGLSS VSWEKVDVSF HSSRQRFAAH SVIQVKNEDM HIEGADVIEH IIDHFHA

Arabidopsis Description

AT5G51180 protein [Source:UniProtKB/TrEMBL;Acc:Q949V0]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.