CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92834
EER95706
EER96498
EES00709
EES02699
EES07338
EES07522
EES10859
EES11004
EES11216
EES11880
EES14354
EES15193
EES18842
EES19950
KXG23692
KXG24249
KXG25038
KXG28257
KXG35179
OQU87300
OQU88311
OQU89311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14340.1	KXG24249	AT1G08480.1	21798944
AT1G14340.1	EES00709	AT1G09180.1	21798944
AT1G14340.1	EES02699	AT1G09180.1	21798944
AT1G14340.1	EES15193	AT1G09180.1	21798944
AT1G14340.1	KXG23692	AT1G09180.1	21798944
AT1G14340.1	KXG28257	AT1G09180.1	21798944
AT1G14340.1	EES00709	AT1G56330.1	21798944
AT1G14340.1	EES02699	AT1G56330.1	21798944
AT1G14340.1	EES15193	AT1G56330.1	21798944
AT1G14340.1	KXG23692	AT1G56330.1	21798944
AT1G14340.1	KXG28257	AT1G56330.1	21798944
AT1G14340.1	EES11004	AT3G01660.1	21798944
AT1G14340.1	EES07338	AT3G07670.1	21798944
AT1G14340.1	EES10859	AT3G11730.1	21798944
AT1G14340.1	EES18842	AT3G11730.1	21798944
AT1G14340.1	OQU88311	AT3G50110.1	21798944
AT1G14340.1	EES00709	AT4G02080.1	21798944
AT1G14340.1	EES02699	AT4G02080.1	21798944
AT1G14340.1	EES15193	AT4G02080.1	21798944
AT1G14340.1	KXG23692	AT4G02080.1	21798944
AT1G14340.1	KXG28257	AT4G02080.1	21798944
AT1G14340.1	KXG35179	AT4G31830.1	21798944
AT1G14340.1	EER95706	AT5G47310.1	21798944
AT1G14340.1	EES07522	AT5G47310.1	21798944
AT1G14340.1	EES11216	AT5G47310.1	21798944
AT1G14340.1	EER96498	AT5G55200.1	21798944
AT1G14340.1	KXG25038	AT5G55200.1	21798944
AT1G14340.1	EES19950	AT5G60860.1	21798944
AT1G14340.1	OQU87300	AT5G60860.1	21798944
AT1G14340.1	OQU89311	AT5G60860.1	21798944
AT1G14340.1	EER92834	AT5G66110.1	21798944
AT1G14340.1	EES11880	AT5G66110.1	21798944
AT1G14340.1	EES14354	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	97.13	95.18
TraesCS2D01G523400.1	Wheat	nucleus	79.92	79.92
TraesCS2B01G551100.1	Wheat	nucleus	79.51	79.51
TraesCS2A01G521600.1	Wheat	nucleus	79.51	79.51
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	79.92	77.69
Os04t0641400-02	Rice	plastid	82.79	70.38
GSMUA_Achr3P19960_001	Banana	cytosol	59.43	59.92
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	56.56	56.1
CDX84035	Canola	nucleus	51.64	51.64
CDX96860	Canola	nucleus	51.64	51.64
Bra016705.1-P	Field mustard	nucleus	51.64	51.64
CDY49093	Canola	cytosol	51.64	51.43
CDY62016	Canola	nucleus	49.18	51.28
Bra019660.1-P	Field mustard	cytosol	51.23	51.23
AT1G14340.1	Thale cress	nucleus	51.23	51.23
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	50.0	49.8
Solyc02g067390.2.1	Tomato	cytosol	46.31	44.31
KRH69305	Soybean	nucleus	52.46	43.99
PGSC0003DMT400017749	Potato	cytosol	45.9	43.92
KRH01160	Soybean	cytosol, nucleus, plastid	45.08	43.14
KRH40110	Soybean	cytosol	45.49	43.02
AT3G01210.1	Thale cress	cytosol	43.44	42.57
CDX74287	Canola	cytosol	41.8	40.48
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	41.8	40.48
Solyc05g007200.2.1	Tomato	mitochondrion	50.0	40.0
CDX91958	Canola	cytosol, nucleus, plastid	40.98	39.68
EER93456	Sorghum	cytosol	36.89	32.61
EER89059	Sorghum	cytosol	35.25	31.97
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	36.89	30.72
EES09901	Sorghum	plastid	36.07	28.57
EES12769	Sorghum	cytosol	33.61	26.11
OQU85574	Sorghum	nucleus	32.79	20.46

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8068465	UniProt:C5Y8Z2	EnsemblPlants:EES12950	ProteinID:EES12950
ProteinID:EES12950.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF7
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3006G236500	SUPFAM:SSF54928	unigene:Sbi.15763
UniParc:UPI0001A8738E	RefSeq:XP_002448622.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:57794834..57798990

Molecular Weight (calculated)

26722.3 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.250

Length

244 amino acids

Sequence
(BLAST)

001: MSETGHTVQV TNLSSRVSES DLHEFFSFSG PIEHIELIRS EDYGATAYVT FKERFALETA VLLSGATIVD QPVCITYWGQ PEETFNFWDR PTWETEEEIE
101: YRNYQTCQYN TTPQEAFTVA QDIMKTMLAK GYVLSKDALA KARAFDESHG LTAAAAARAA ELSKRIGLTD RVNAGVGAMR SVDETYRVRE TTKTVATATG
201: RTAAKVVNGI VTSSYFSAGA MMLSDALTRA AKAAADLAAH GRQS

Best Arabidopsis Sequence Match ( AT1G14340.1 )
(BLAST)

001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.