Factsheet for Bra001017.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74287	Canola	cytosol	99.6	99.6
CDX91958	Canola	cytosol, nucleus, plastid	98.81	98.81
AT3G01210.1	Thale cress	cytosol	88.1	89.16
KRH01160	Soybean	cytosol, nucleus, plastid	53.57	52.94
KRH40110	Soybean	cytosol	53.97	52.71
Solyc02g067390.2.1	Tomato	cytosol	50.4	49.8
PGSC0003DMT400017749	Potato	cytosol	50.4	49.8
Bra019660.1-P	Field mustard	cytosol	44.44	45.9
Bra016705.1-P	Field mustard	nucleus	44.05	45.49
GSMUA_Achr3P19960_001	Banana	cytosol	43.25	45.04
TraesCS2D01G523400.1	Wheat	nucleus	42.06	43.44
TraesCS2B01G551100.1	Wheat	nucleus	41.67	43.03
Zm00001d026425_P003	Maize	cytosol	41.27	42.62
TraesCS2A01G521600.1	Wheat	nucleus	41.27	42.62
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	41.67	41.83
EES12950	Sorghum	cytosol, nucleus, plastid	40.48	41.8
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	39.68	40.16
Os04t0641400-02	Rice	plastid	42.06	36.93
Bra023585.1-P	Field mustard	nucleus	33.33	33.2
Bra006373.1-P	Field mustard	cytosol	32.14	31.03
Bra008589.1-P	Field mustard	cytosol	31.75	30.53
Bra039914.1-P	Field mustard	cytosol	29.37	28.14
Bra040177.1-P	Field mustard	nucleus	30.56	25.5
Bra012646.1-P	Field mustard	nucleus	30.56	24.68
Bra024988.1-P	Field mustard	vacuole	30.56	23.12
Bra012647.1-P	Field mustard	cytosol	16.67	20.19

Protein Annotations

EnsemblPlants:Bra001017.1	EnsemblPlants:Bra001017.1-P	EnsemblPlantsGene:Bra001017	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF1	PFAM:PF00076	SEG:seg	SUPFAM:SSF54928	UniParc:UPI00025407F7
UniProt:M4C9Y8	MapMan:35.1	:	:	:	:

Description

AT3G01210 (E=3e-098) | nucleic acid binding / oxidoreductase

Coordinates

chrA03:-:14397659..14398650

Molecular Weight (calculated)

26617.4 Da

IEP (calculated)

5.029

GRAVY (calculated)

0.115

Length

252 amino acids

Sequence
(BLAST)

001: MYPCGYVAEV TNLSPRATEK DVQSFFSHCG IVELVEITGC QGDDALTAYV TFRDAYALDM ALLLTGATIV DQTVWISMYG VYLHESNNLT REEDYTVTVT
101: QSHADAFASS PGEAVTIAQQ VVKTMISKGY VLSKDAIGKA KALDESQGFS SLVANKLAEI GRYIGLTQNI QSSMEVVRSA DDKYHFSDFT KSAVLVTGTA
201: AVAAATITGK VAASAATTVV NSRYFANGAL WFSDALGRAA KAAAHMGGGG SS

Best Arabidopsis Sequence Match ( AT3G01210.2 )
(BLAST)

001: MYPCGYVAQV TNLSPQATEK DVHRFFSHCG IVELVEITGC QGDALTAYVT FRDAYALDMA VLLSGATIVD QTVWISVYGV YLHESNNLRQ EEDYSVTVTR
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9MAD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.