Factsheet for Bra039914.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38176	Canola	cytosol	99.24	99.24
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	98.1	96.99
AT5G32450.1	Thale cress	cytosol	82.89	81.65
VIT_08s0032g00290.t01	Wine grape	cytosol	69.2	67.91
GSMUA_Achr4P10680_001	Banana	cytosol	67.3	66.79
Solyc10g076890.1.1	Tomato	cytosol	68.44	65.93
CDY60084	Canola	cytosol, nucleus, plastid	19.01	65.79
PGSC0003DMT400018578	Potato	cytosol	68.06	65.09
KRH06674	Soybean	cytosol	67.68	64.49
GSMUA_Achr8P04640_001	Banana	cytosol	64.64	63.91
EER93456	Sorghum	cytosol	66.54	63.41
TraesCS5B01G392900.1	Wheat	cytosol	64.26	62.13
KRG94865	Soybean	cytosol	57.79	61.54
Os03t0748900-01	Rice	cytosol	64.64	61.15
TraesCS5A01G387800.1	Wheat	cytosol	63.12	61.03
Zm00001d013271_P003	Maize	cytosol	65.02	60.85
TraesCS5D01G397700.2	Wheat	cytosol	63.5	60.29
HORVU5Hr1G095000.1	Barley	nucleus	63.5	45.26
Bra023585.1-P	Field mustard	nucleus	40.3	41.9
GSMUA_AchrUn_...	Banana	cytosol	25.48	41.61
Bra008589.1-P	Field mustard	cytosol	41.06	41.22
Bra006373.1-P	Field mustard	cytosol	39.54	39.85
Bra019660.1-P	Field mustard	cytosol	34.98	37.7
Bra016705.1-P	Field mustard	nucleus	34.22	36.89
Bra040177.1-P	Field mustard	nucleus	42.21	36.76
Bra012646.1-P	Field mustard	nucleus	42.21	35.58
Bra024988.1-P	Field mustard	vacuole	40.68	32.13
Bra012647.1-P	Field mustard	cytosol	25.1	31.73
Zm00001d033453_P001	Maize	cytosol	37.64	29.46
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	28.14	29.37

Protein Annotations

EnsemblPlants:Bra039914.1	EnsemblPlants:Bra039914.1-P	EnsemblPlantsGene:Bra039914	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44136	PANTHER:PTHR44136:SF3	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002541186	UniProt:M4FFP0	MapMan:35.1	:	:

Description

AT5G32450 (E=2e-110) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:-:1687417..1688971

Molecular Weight (calculated)

28436.8 Da

IEP (calculated)

9.972

GRAVY (calculated)

-0.246

Length

263 amino acids

Sequence
(BLAST)

001: MQQQTRSVRV ENVSDLATER EIHEFFSFSG DIDHIEILKD ASEQSRVAFV TFTEPKALEI ALLLSGATIV DKIVTITPAE NYVPRREIMQ QVGENTIPPT
101: PTRQTADGNG GRAYVSKAQD VMATVLAKGS ALGQDAVNKA KAFDELHQLR ANASAKVSSF DKRVRLSEKF NVGISVVNEK VKSVDQRLQV SDKTMAAIFA
201: AEKKLNDTGS AVKSSRYVTA GAAWFSGAFS KVARAGQLAG SKTKEKFNLA VSNIASKDTP IAV

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.