Factsheet for Solyc10g076890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018578	Potato	cytosol	97.8	97.09
VIT_08s0032g00290.t01	Wine grape	cytosol	75.82	77.24
AT5G32450.1	Thale cress	cytosol	69.6	71.16
KRH06674	Soybean	cytosol	71.43	70.65
KRG94865	Soybean	cytosol	63.74	70.45
CDY38176	Canola	cytosol	66.67	69.2
GSMUA_Achr4P10680_001	Banana	cytosol	67.03	69.06
Bra039914.1-P	Field mustard	cytosol	65.93	68.44
EER93456	Sorghum	cytosol	68.5	67.75
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	65.93	67.67
TraesCS5B01G392900.1	Wheat	cytosol	65.93	66.18
GSMUA_Achr8P04640_001	Banana	cytosol	64.47	66.17
Zm00001d013271_P003	Maize	cytosol	67.4	65.48
Os03t0748900-01	Rice	cytosol	65.57	64.39
TraesCS5A01G387800.1	Wheat	cytosol	64.1	64.34
TraesCS5D01G397700.2	Wheat	cytosol	64.1	63.18
CDY60084	Canola	cytosol, nucleus, plastid	15.75	56.58
HORVU5Hr1G095000.1	Barley	nucleus	65.2	48.24
Solyc03g097110.2.1	Tomato	nucleus	43.59	42.81
GSMUA_AchrUn_...	Banana	cytosol	24.91	42.24
Solyc08g076530.2.1	Tomato	plastid	42.86	41.64
Solyc02g067390.2.1	Tomato	cytosol	32.23	34.51
Solyc06g072770.2.1	Tomato	nucleus	42.12	31.59
Solyc05g007200.2.1	Tomato	mitochondrion	35.16	31.48
Zm00001d033453_P001	Maize	cytosol	37.36	30.36

Protein Annotations

EnsemblPlants:Solyc10g076890.1.1	EnsemblPlantsGene:Solyc10g076890.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF3	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002769F1A	UniProt:K4D231	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr10:+:59865016..59869590

Molecular Weight (calculated)

29498.0 Da

IEP (calculated)

10.280

GRAVY (calculated)

-0.279

Length

273 amino acids

Sequence
(BLAST)

001: MQEVRTVRVG NVSDLAAERE VREFFSFSGE IDHIEIRREQ GQSKTAFVTF KDPKALEIAL LLSGATIVDQ IVSIKQAEDY VPSSETREVR IVDNAVNVAG
101: ESSSPLAEAK PTSPSNGRVN GKVYISKAQD VVSNVLAKGS AIRQDAMNKA KAFDEKHQLR ATASARVISF DRRVGLTEKL TVGISVVNEK VKSVDQRLQV
201: SDKTMAAVMA AERKLNDTGS AVKSSRYVNA GAAWLNGAFS KVAKAGQVAG TKTREKWNFA LSNLTAKDPS IVA

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.