Factsheet for Zm00001d013271_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93456	Sorghum	cytosol	95.02	96.74
Os03t0748900-01	Rice	cytosol	85.77	86.69
TraesCS5B01G392900.1	Wheat	cytosol	81.49	84.19
TraesCS5A01G387800.1	Wheat	cytosol	80.78	83.46
TraesCS5D01G397700.2	Wheat	cytosol	78.65	79.78
GSMUA_Achr4P10680_001	Banana	cytosol	67.62	71.7
GSMUA_Achr8P04640_001	Banana	cytosol	66.55	70.3
PGSC0003DMT400018578	Potato	cytosol	66.19	67.64
Solyc10g076890.1.1	Tomato	cytosol	65.48	67.4
VIT_08s0032g00290.t01	Wine grape	cytosol	64.06	67.16
Bra039914.1-P	Field mustard	cytosol	60.85	65.02
CDY38176	Canola	cytosol	60.85	65.02
KRH06674	Soybean	cytosol	63.7	64.86
KRG94865	Soybean	cytosol	56.23	63.97
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	60.5	63.91
AT5G32450.1	Thale cress	cytosol	59.07	62.17
HORVU5Hr1G095000.1	Barley	nucleus	81.49	62.06
CDY60084	Canola	cytosol, nucleus, plastid	13.88	51.32
GSMUA_AchrUn_...	Banana	cytosol	25.62	44.72
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	40.93	41.37
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	40.57	40.28
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	40.21	39.93
Zm00001d033453_P001	Maize	cytosol	46.26	38.69
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	40.57	36.31
Zm00001d002475_P001	Maize	extracellular	39.86	35.67
Zm00001d026425_P003	Maize	cytosol	30.96	35.66
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	30.96	34.94
Zm00001d035920_P002	Maize	extracellular, vacuole	41.64	33.81
Zm00001d026150_P001	Maize	cytosol	27.4	32.08
Zm00001d031612_P001	Maize	cytosol	27.4	32.08
Zm00001d054082_P001	Maize	cytosol	32.03	31.8
Zm00001d046992_P001	Maize	cytosol	33.45	28.75
Zm00001d053093_P001	Maize	cytosol, plastid	32.03	28.39
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	31.67	27.38
Zm00001d051524_P002	Maize	nucleus	35.23	24.57
Zm00001d014267_P001	Maize	nucleus	34.88	23.22
Zm00001d046215_P001	Maize	cytosol	23.13	20.31

Protein Annotations

EntrezGene:100281821	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6GH73	ProteinID:AQK62875.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR32343	PANTHER:PTHR32343:SF9	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008436C75	EnsemblPlantsGene:Zm00001d013271	EnsemblPlants:Zm00001d013271_P003	EnsemblPlants:Zm00001d013271_T003

Description

RNA binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr5:-:7527580..7531509

Molecular Weight (calculated)

30898.6 Da

IEP (calculated)

10.095

GRAVY (calculated)

-0.312

Length

281 amino acids

Sequence
(BLAST)

001: MENFRLQEMG KRAVRTVRVR NISDLATERE VREFFSFSGE IEHVDIRFDT VSSGRTAYVT FKDPKALEIA LLLSGATIVD QIVNITPAED YIYIPVTEQQ
101: LMVHEVTSRS SASNAELEYS SEANVSPNSR VYVSKAHDVM TNVIAKGSAM RQDAVNKAKA FDEKHQFRAN ASARINSFDK RVGLSEKINN GISVVNERVK
201: SVDQRLHVSD KTMAALLAAE RKLNDTGSAV KTNRYVSAGT SWLNGAFSKV AKAGHVAGSR TREKFQLAVS NLTAKGPAVV A

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.