Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89059 | Sorghum | cytosol | 73.12 | 94.05 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 72.25 | 89.93 |
| Os06t0112400-01 | Rice | plasma membrane | 66.76 | 88.51 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 64.16 | 84.41 |
| TraesCS7D01G027100.1 | Wheat | plastid | 64.45 | 83.83 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 64.45 | 83.83 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 54.34 | 77.05 |
| TraesCS7A01G030900.2 | Wheat | plastid | 64.45 | 70.79 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 56.36 | 70.14 |
| Solyc03g097110.2.1 | Tomato | nucleus | 50.87 | 63.31 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 51.45 | 63.12 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 50.29 | 62.59 |
| KRH39571 | Soybean | nucleus | 50.29 | 62.14 |
| Bra023585.1-P | Field mustard | nucleus | 45.38 | 62.06 |
| KRH74377 | Soybean | endoplasmic reticulum | 50.0 | 62.01 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 49.42 | 61.73 |
| CDY01476 | Canola | cytosol | 25.43 | 61.54 |
| AT5G16840.2 | Thale cress | nucleus | 45.38 | 60.38 |
| Bra006373.1-P | Field mustard | cytosol | 45.38 | 60.15 |
| CDX78713 | Canola | cytosol | 45.38 | 60.15 |
| CDX70721 | Canola | cytosol | 44.51 | 59.0 |
| Solyc08g076530.2.1 | Tomato | plastid | 47.4 | 58.36 |
| PGSC0003DMT400038377 | Potato | cytosol | 47.4 | 58.36 |
| CDX69415 | Canola | cytosol | 43.64 | 58.08 |
| Bra008589.1-P | Field mustard | cytosol | 43.64 | 57.63 |
| CDY01477 | Canola | cytosol | 47.4 | 54.13 |
| CDX78795 | Canola | nucleus | 46.82 | 53.47 |
| Bra012646.1-P | Field mustard | nucleus | 47.98 | 53.21 |
| CDX90453 | Canola | cytosol | 47.4 | 53.07 |
| Bra040177.1-P | Field mustard | nucleus | 46.24 | 52.98 |
| CDY60787 | Canola | nucleus | 46.24 | 52.81 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 47.69 | 52.72 |
| AT5G46870.1 | Thale cress | nucleus | 44.8 | 52.54 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 42.2 | 51.59 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 46.53 | 51.27 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 41.62 | 50.88 |
| Zm00001d002475_P001 | Maize | extracellular | 45.95 | 50.64 |
| CDX85485 | Canola | plastid | 45.66 | 50.16 |
| CDY16974 | Canola | plastid | 44.22 | 48.11 |
| KRH24024 | Soybean | nucleus | 40.17 | 47.6 |
| Zm00001d054082_P001 | Maize | cytosol | 38.73 | 47.35 |
| CDY01473 | Canola | nucleus | 26.88 | 46.97 |
| PGSC0003DMT400069547 | Potato | nucleus | 45.09 | 45.88 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 44.22 | 45.67 |
| Bra024988.1-P | Field mustard | vacuole | 43.93 | 45.65 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 43.64 | 45.35 |
| Bra012647.1-P | Field mustard | cytosol | 27.17 | 45.19 |
| CDX90455 | Canola | cytosol | 27.17 | 45.19 |
| Zm00001d026150_P001 | Maize | cytosol | 30.64 | 44.17 |
| Zm00001d031612_P001 | Maize | cytosol | 30.64 | 44.17 |
| Solyc06g072770.2.1 | Tomato | nucleus | 45.38 | 43.13 |
| Zm00001d046992_P001 | Maize | cytosol | 39.88 | 42.2 |
| Zm00001d013271_P003 | Maize | cytosol | 33.81 | 41.64 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 35.55 | 38.8 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 36.13 | 38.46 |
| CDY38083 | Canola | nucleus | 45.09 | 37.23 |
| Zm00001d026425_P003 | Maize | cytosol | 25.72 | 36.48 |
| Zm00001d051524_P002 | Maize | nucleus | 41.04 | 35.24 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 24.28 | 33.73 |
| Zm00001d014267_P001 | Maize | nucleus | 40.46 | 33.18 |
| Zm00001d046215_P001 | Maize | cytosol | 27.17 | 29.38 |
| Zm00001d033453_P001 | Maize | cytosol | 20.52 | 21.13 |
Protein Annotations
| EntrezGene:100193283 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6LJL5 | ProteinID:AQK79935.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR32343 | PANTHER:PTHR32343:SF10 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000842FC31 | InterPro:Vip1-like_RRM_plant | EnsemblPlantsGene:Zm00001d035920 | EnsemblPlants:Zm00001d035920_P002 |
| EnsemblPlants:Zm00001d035920_T002 | SEG:seg | : | : | : | : |
Description
Binding partner of ACD11 1
Coordinates
chr6:-:60308108..60311445
Molecular Weight (calculated)
36446.4 Da
IEP (calculated)
9.322
GRAVY (calculated)
-0.116
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATAVKFPV EAPLGAASLA APLGLGFALD LGDWSVACSY GRTHDRPSCS NLLRDTAANR GAEHARVAVL GQLGLPNRML WDRCSVLLQP RTVKVTNVSL
101: SATVQDIKEF FSFSGDIEHV EMQSGDEWSQ IAYVTFKDAQ GAETALLLSG ATIVDLSVII GPAPEYQPPP IASAPPMSGT RVPVGGDNNV VHKAEDVVST
201: MLAKGFVLGK DAVGKAKAFD EKHGFTSTAG AKVASIDKKI GLSNKITTGT SLVSGKVKEM DQKFQVSDKT KSAFAAAEQK VSSAGSAIMK NRYVFTGASW
301: VTGAFNKVAK AATDVGTMTK EKMAAEEQQK GFSGPSSRSH SYTPIR
101: SATVQDIKEF FSFSGDIEHV EMQSGDEWSQ IAYVTFKDAQ GAETALLLSG ATIVDLSVII GPAPEYQPPP IASAPPMSGT RVPVGGDNNV VHKAEDVVST
201: MLAKGFVLGK DAVGKAKAFD EKHGFTSTAG AKVASIDKKI GLSNKITTGT SLVSGKVKEM DQKFQVSDKT KSAFAAAEQK VSSAGSAIMK NRYVFTGASW
301: VTGAFNKVAK AATDVGTMTK EKMAAEEQQK GFSGPSSRSH SYTPIR
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.