Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 94.29 | 93.73 |
| AT5G46870.1 | Thale cress | nucleus | 76.58 | 86.44 |
| CDY01476 | Canola | cytosol | 31.23 | 72.73 |
| CDX78795 | Canola | nucleus | 65.47 | 71.95 |
| CDX90453 | Canola | cytosol | 66.67 | 71.84 |
| CDY01477 | Canola | cytosol | 65.17 | 71.62 |
| CDY60787 | Canola | nucleus | 64.86 | 71.29 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 56.46 | 66.67 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 48.65 | 66.39 |
| Solyc08g076530.2.1 | Tomato | plastid | 55.86 | 66.19 |
| PGSC0003DMT400038377 | Potato | cytosol | 55.56 | 65.84 |
| KRH74377 | Soybean | endoplasmic reticulum | 54.65 | 65.23 |
| CDY01473 | Canola | nucleus | 38.74 | 65.15 |
| KRH39571 | Soybean | nucleus | 54.65 | 65.0 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 52.25 | 62.59 |
| CDX90455 | Canola | cytosol | 35.74 | 57.21 |
| Os06t0112400-01 | Rice | plasma membrane | 43.54 | 55.56 |
| CDX70721 | Canola | cytosol | 43.54 | 55.56 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 44.14 | 55.26 |
| TraesCS7D01G027100.1 | Wheat | plastid | 44.14 | 55.26 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 43.54 | 55.13 |
| EER89059 | Sorghum | cytosol | 44.44 | 55.02 |
| CDX78713 | Canola | cytosol | 42.94 | 54.79 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 44.74 | 53.6 |
| CDX69415 | Canola | cytosol | 41.44 | 53.08 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 49.85 | 52.87 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 47.75 | 52.13 |
| EES12769 | Sorghum | cytosol | 48.65 | 51.59 |
| Os04t0594400-01 | Rice | plasma membrane | 48.65 | 51.59 |
| Zm00001d002475_P001 | Maize | extracellular | 48.35 | 51.27 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 48.35 | 51.11 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 48.35 | 50.79 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 47.75 | 50.16 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 41.14 | 49.28 |
| TraesCS7A01G030900.2 | Wheat | plastid | 44.74 | 47.3 |
| Zm00001d031612_P001 | Maize | cytosol | 33.63 | 46.67 |
| Zm00001d026150_P001 | Maize | cytosol | 33.63 | 46.67 |
| CDX85485 | Canola | plastid | 41.44 | 43.81 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 45.35 | 43.64 |
| CDY16974 | Canola | plastid | 41.44 | 43.4 |
| Zm00001d054082_P001 | Maize | cytosol | 36.34 | 42.76 |
| CDY38176 | Canola | cytosol | 32.43 | 41.06 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 32.13 | 40.23 |
| CDY01872 | Canola | cytosol, plastid | 34.23 | 40.14 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 38.74 | 39.69 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 45.35 | 39.53 |
| Os04t0624800-01 | Rice | nucleus | 44.14 | 39.1 |
| Zm00001d046992_P001 | Maize | cytosol | 37.84 | 38.53 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 45.65 | 38.29 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 8.71 | 38.16 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 45.05 | 37.78 |
| OQU85574 | Sorghum | nucleus | 42.34 | 36.06 |
| CDY49093 | Canola | cytosol | 25.83 | 35.1 |
| CDY62016 | Canola | nucleus | 24.62 | 35.04 |
| CDX96860 | Canola | nucleus | 25.53 | 34.84 |
| CDX84035 | Canola | nucleus | 24.92 | 34.02 |
| Zm00001d051524_P002 | Maize | nucleus | 41.14 | 33.99 |
| CDY38083 | Canola | nucleus | 41.74 | 33.17 |
| Zm00001d014267_P001 | Maize | nucleus | 41.14 | 32.46 |
| CDX74287 | Canola | cytosol | 24.02 | 31.75 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 23.72 | 31.35 |
| Zm00001d046215_P001 | Maize | cytosol | 27.93 | 29.06 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078H6I7 | UniProt:A0A078H6I7 | EnsemblPlants:CDY33486 | ProteinID:CDY33486 |
| ProteinID:CDY33486.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00054733001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44136 |
| PANTHER:PTHR44136:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE2705 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g35870DBnaA06g35870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6I7]
Coordinates
chrLK032315:+:247241..249031
Molecular Weight (calculated)
36061.3 Da
IEP (calculated)
5.210
GRAVY (calculated)
-0.497
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSFSYPEF LSRLIFMVTV KVSNVSLGAT ERELKEFFSF SGEIVYLEMQ GDNEGGSKLA YVTFKDLQGA ETAVLLTGAT IVDSSVTVTM SPDYQLPPDA
101: LASIESSKES DKSSSSSPPK EDVSVFRKAE DVVRNMISKG FILGKDAIAK AKSLDEKHQL TSTASAKVTS FDKRIGFTEK INTGTTAVSG KVKEVDQKFQ
201: VTEKTKSAIA AAEQTVSNAG STIMKNRYVL TGTTWVAGAF EKVSKAAEEV GQKAKEKVGR AQEDEEKKKE VEEVASVHLS ESPKALDQPE QDSKLSVSPK
301: DLNQPEHDSK LSESKLQPHK QEETTPSVAS GQP
101: LASIESSKES DKSSSSSPPK EDVSVFRKAE DVVRNMISKG FILGKDAIAK AKSLDEKHQL TSTASAKVTS FDKRIGFTEK INTGTTAVSG KVKEVDQKFQ
201: VTEKTKSAIA AAEQTVSNAG STIMKNRYVL TGTTWVAGAF EKVSKAAEEV GQKAKEKVGR AQEDEEKKKE VEEVASVHLS ESPKALDQPE QDSKLSVSPK
301: DLNQPEHDSK LSESKLQPHK QEETTPSVAS GQP
001: MSMVTVKVSN VSLEATERDL KEFFSFSGDI AYLETQSEND GSKLAYVTFK DLQGAETAVL LTGSTIVDSS VTVTMSPDYQ LPPDALASIE SLKESNKSSS
101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS
201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV
101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS
201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV
Arabidopsis Description
At5g46870 [Source:UniProtKB/TrEMBL;Acc:Q6NM69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.