Factsheet for GSMUA_Achr5P14070_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04780_001
GSMUA_Achr1P11940_001
GSMUA_Achr3P15540_001
GSMUA_Achr4P02760_001
GSMUA_Achr5P09130_001
GSMUA_Achr5P28860_001
GSMUA_Achr6P17450_001
GSMUA_Achr6P34270_001
GSMUA_Achr7P10970_001
GSMUA_Achr7P14790_001
GSMUA_Achr8P02620_001
GSMUA_Achr8P27180_001
GSMUA_Achr9P03220_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	GSMUA_Achr10P...	AT3G11730.1	21798944
AT4G17720.1	GSMUA_Achr6P17450_001	AT3G11730.1	21798944
AT4G17720.1	GSMUA_Achr10P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr10P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr11P...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr6P34270_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr8P02620_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_Achr9P03220_001	AT3G46060.1	21798944
AT4G17720.1	GSMUA_AchrUn_...	AT3G46060.1	21798944
AT4G17720.1	GSMUA_AchrUn_...	AT4G25680.1	21798944
AT4G17720.1	GSMUA_Achr5P28860_001	AT5G58750.1	21798944
AT4G17720.1	GSMUA_Achr1P04780_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr1P11940_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr3P15540_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr4P02760_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr5P09130_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr7P10970_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr7P14790_001	AT5G60860.1	21798944
AT4G17720.1	GSMUA_Achr8P27180_001	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	57.19	65.16
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	61.51	61.51
VIT_02s0012g01860.t01	Wine grape	cytosol	60.07	59.22
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	58.99	59.21
Solyc08g076530.2.1	Tomato	plastid	58.63	58.01
PGSC0003DMT400038377	Potato	cytosol	58.63	58.01
Solyc03g097110.2.1	Tomato	nucleus	56.83	56.83
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	56.12	56.12
KRH74377	Soybean	endoplasmic reticulum	56.12	55.91
KRH39571	Soybean	nucleus	55.76	55.36
CDY01476	Canola	cytosol	28.06	54.55
GSMUA_Achr8P14700_001	Banana	plastid	58.99	53.77
Os04t0594400-01	Rice	plasma membrane	58.63	51.91
AT5G16840.2	Thale cress	nucleus	47.12	50.38
EES12769	Sorghum	cytosol	56.83	50.32
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	56.47	50.0
TraesCS2D01G444000.1	Wheat	extracellular	56.47	49.84
CDY01477	Canola	cytosol	53.96	49.51
Bra006373.1-P	Field mustard	cytosol	46.4	49.43
CDX78713	Canola	cytosol	46.4	49.43
Bra023585.1-P	Field mustard	nucleus	44.96	49.41
Zm00001d002475_P001	Maize	extracellular	55.76	49.36
TraesCS2A01G445100.1	Wheat	extracellular	56.12	49.21
TraesCS2B01G466100.1	Wheat	extracellular	56.12	49.21
CDX90453	Canola	cytosol	54.32	48.87
CDX78795	Canola	nucleus	53.24	48.84
CDY60787	Canola	nucleus	53.24	48.84
Bra012646.1-P	Field mustard	nucleus	54.68	48.72
Bra040177.1-P	Field mustard	nucleus	52.88	48.68
CDX70721	Canola	cytosol	45.68	48.66
CDX69415	Canola	cytosol	44.6	47.69
Bra008589.1-P	Field mustard	cytosol	44.6	47.33
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	53.24	47.28
KRH24024	Soybean	nucleus	48.92	46.58
AT5G46870.1	Thale cress	nucleus	49.28	46.44
Zm00001d026150_P001	Maize	cytosol	37.77	43.75
Zm00001d031612_P001	Maize	cytosol	37.77	43.75
Zm00001d054082_P001	Maize	cytosol	44.24	43.46
CDY01473	Canola	nucleus	29.86	41.92
GSMUA_Achr4P10680_001	Banana	cytosol	39.93	41.89
Os04t0624800-01	Rice	nucleus	55.76	41.22
PGSC0003DMT400069547	Potato	nucleus	50.36	41.18
Bra024988.1-P	Field mustard	vacuole	49.28	41.14
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.28	41.14
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	49.28	40.9
Bra012647.1-P	Field mustard	cytosol	30.58	40.87
CDX90455	Canola	cytosol	30.58	40.87
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	45.68	40.58
CDX85485	Canola	plastid	44.96	39.68
GSMUA_Achr8P04640_001	Banana	cytosol	37.77	39.47
CDY16974	Canola	plastid	44.96	39.31
Zm00001d046992_P001	Maize	cytosol	46.04	39.14
TraesCS6D01G249000.1	Wheat	nucleus, plastid	52.88	38.48
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	44.6	38.15
Solyc06g072770.2.1	Tomato	nucleus	49.64	37.91
TraesCS6A01G265600.1	Wheat	extracellular	53.6	37.53
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	52.52	36.78
GSMUA_Achr4P03340_001	Banana	nucleus	24.1	36.61
OQU85574	Sorghum	nucleus	49.64	35.29
GSMUA_Achr3P19960_001	Banana	cytosol	29.86	34.3
Zm00001d051524_P002	Maize	nucleus	49.64	34.24
Zm00001d014267_P001	Maize	nucleus	49.64	32.7
CDY38083	Canola	nucleus	44.96	29.83
Zm00001d046215_P001	Maize	cytosol	33.09	28.75
GSMUA_AchrUn_...	Banana	cytosol	16.19	27.95

Protein Annotations

EnsemblPlants:GSMUA_Achr5P14070_001	EnsemblPlants:GSMUA_Achr5T14070_001	EnsemblPlantsGene:GSMUA_Achr5G14070_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44136	PANTHER:PTHR44136:SF5	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002956C07	UniProt:M0SYD6	MapMan:35.1	:

Description

Putative Protein vip1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14070_001]

Coordinates

chr5:+:10126161..10133986

Molecular Weight (calculated)

29792.3 Da

IEP (calculated)

5.721

GRAVY (calculated)

-0.322

Length

278 amino acids

Sequence
(BLAST)

001: MSVRTVKVGN VSLSASEQDI REFFSFSGDI EYIEMQSGDE RSQVAYVTFK KSDGAEMALL LSGATIVDMT VIITPATDYQ LPAAASIPYM SKDGAASNKE
101: TSIQKAENVI STMLAKGLIL GKGALESAKS FDEKHQLSST AMTKVSNLDH KIGLTEKIST GTSAVNEKVL EMDHRYQVSE KARSAITAAE QKISNVGSAA
201: MENKYVFAGV SWMIGAINKV TKTASEVGTK AVEKATAEQQ QNKSSPEDAQ DRVHSPETSV ASPPDHPKKP EPVQGLIL

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.