Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 58.9 | 62.09 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 50.0 | 59.84 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 54.45 | 57.19 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 54.45 | 57.19 |
| Solyc03g097110.2.1 | Tomato | nucleus | 54.45 | 57.19 |
| KRH39571 | Soybean | nucleus | 54.45 | 56.79 |
| KRH74377 | Soybean | endoplasmic reticulum | 53.42 | 55.91 |
| AT5G16840.2 | Thale cress | nucleus | 48.63 | 54.62 |
| CDX69415 | Canola | cytosol | 48.63 | 54.62 |
| CDX78713 | Canola | cytosol | 48.63 | 54.41 |
| CDX70721 | Canola | cytosol | 48.63 | 54.41 |
| Bra006373.1-P | Field mustard | cytosol | 48.63 | 54.41 |
| Bra023585.1-P | Field mustard | nucleus | 46.92 | 54.15 |
| Os06t0112400-01 | Rice | plasma membrane | 47.95 | 53.64 |
| Bra008589.1-P | Field mustard | cytosol | 47.95 | 53.44 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 47.95 | 53.23 |
| EER89059 | Sorghum | cytosol | 48.29 | 52.42 |
| TraesCS7D01G027100.1 | Wheat | plastid | 47.26 | 51.88 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 46.92 | 51.5 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 46.92 | 49.28 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 46.58 | 48.92 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 51.71 | 48.09 |
| Os04t0594400-01 | Rice | plasma membrane | 51.37 | 47.77 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 49.66 | 47.54 |
| Zm00001d002475_P001 | Maize | extracellular | 51.03 | 47.45 |
| EES12769 | Sorghum | cytosol | 51.03 | 47.45 |
| Zm00001d031612_P001 | Maize | cytosol | 37.67 | 45.83 |
| Zm00001d026150_P001 | Maize | cytosol | 37.67 | 45.83 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 48.97 | 45.4 |
| CDY16974 | Canola | plastid | 48.97 | 44.97 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 48.63 | 44.8 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 48.63 | 44.8 |
| PGSC0003DMT400069547 | Potato | nucleus | 51.03 | 43.82 |
| TraesCS7A01G030900.2 | Wheat | plastid | 47.26 | 43.81 |
| CDX85485 | Canola | plastid | 47.26 | 43.81 |
| Zm00001d054082_P001 | Maize | cytosol | 40.07 | 41.34 |
| Solyc06g072770.2.1 | Tomato | nucleus | 50.68 | 40.66 |
| Os04t0624800-01 | Rice | nucleus | 52.05 | 40.43 |
| KRH70369 | Soybean | cytosol | 42.81 | 40.32 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 47.6 | 40.17 |
| KRH49688 | Soybean | nucleus | 42.47 | 40.0 |
| KRG94865 | Soybean | cytosol | 32.53 | 38.46 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 41.78 | 37.54 |
| Zm00001d046992_P001 | Maize | cytosol | 41.1 | 36.7 |
| KRH06674 | Soybean | cytosol | 34.59 | 36.59 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 47.26 | 36.13 |
| OQU85574 | Sorghum | nucleus | 47.26 | 35.29 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 47.6 | 35.01 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 47.26 | 34.76 |
| Zm00001d051524_P002 | Maize | nucleus | 45.55 | 33.0 |
| CDY38083 | Canola | nucleus | 46.92 | 32.7 |
| KRH40110 | Soybean | cytosol | 28.77 | 32.56 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 28.42 | 32.55 |
| Zm00001d046215_P001 | Maize | cytosol | 34.25 | 31.25 |
| Zm00001d014267_P001 | Maize | nucleus | 44.52 | 30.81 |
| KRH69305 | Soybean | nucleus | 30.14 | 30.24 |
Protein Annotations
| EntrezGene:100784398 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02007166 | EnsemblPlantsGene:GLYMA_12G017300 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1LP71 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH24024 | ProteinID:KRH24024 | ProteinID:KRH24024.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000233D1B8 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:+:1217529..1220237
Molecular Weight (calculated)
30799.9 Da
IEP (calculated)
5.776
GRAVY (calculated)
-0.457
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSVKVSNI SSTATEQDLR EFLAFPGKIE YIEMQSDKGN SQVAYVTFSN PEGAETAVLL SGAVVCGQSL TIALAPDHAL PASAASATQT SNAESGESGL
101: RKAEDVVTGL LAKGFILGKD ALNRAKSFDE RHQLTSTATA KVVSLDQKVG FTEKISAGTV IVNDKMKEMD EKFQVSEKTK SAISVAEQSV SSAGSAIMKN
201: RYVLTGATWV TGAYSRVAKA AEEVGQKTKE KVLAQDNQGK TEEGAHVHTS ISEPNQPSKT EPQQATTANQ PSKPEQQATK DGQPSNSATT KD
101: RKAEDVVTGL LAKGFILGKD ALNRAKSFDE RHQLTSTATA KVVSLDQKVG FTEKISAGTV IVNDKMKEMD EKFQVSEKTK SAISVAEQSV SSAGSAIMKN
201: RYVLTGATWV TGAYSRVAKA AEEVGQKTKE KVLAQDNQGK TEEGAHVHTS ISEPNQPSKT EPQQATTANQ PSKPEQQATK DGQPSNSATT KD
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.