Factsheet for Zm00001d051524_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003588_P002
Zm00001d003789_P002
Zm00001d005215_P001
Zm00001d009572_P001
Zm00001d010538_P005
Zm00001d034638_P001
Zm00001d035741_P002
Zm00001d038380_P001
Zm00001d039016_P001
Zm00001d043935_P001
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	Zm00001d003588_P002	AT3G11730.1	21798944
AT4G17720.1	Zm00001d003789_P002	AT3G11730.1	21798944
AT4G17720.1	Zm00001d005215_P001	AT3G11730.1	21798944
AT4G17720.1	Zm00001d035741_P002	AT3G11730.1	21798944
AT4G17720.1	Zm00001d010538_P005	AT3G46060.1	21798944
AT4G17720.1	Zm00001d034638_P001	AT3G46060.1	21798944
AT4G17720.1	Zm00001d038380_P001	AT3G46060.1	21798944
AT4G17720.1	Zm00001d045580_P001	AT4G25680.1	21798944
AT4G17720.1	Zm00001d009572_P001	AT5G60860.1	21798944
AT4G17720.1	Zm00001d039016_P001	AT5G60860.1	21798944
AT4G17720.1	Zm00001d043935_P001	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054082_P001	Maize	cytosol	67.74	96.47
Zm00001d046215_P001	Maize	cytosol	76.18	95.94
Zm00001d046992_P001	Maize	cytosol	74.94	92.35
Zm00001d014267_P001	Maize	nucleus	94.79	90.52
OQU85574	Sorghum	nucleus	85.61	88.24
Os04t0624800-01	Rice	nucleus	62.03	66.49
TraesCS6D01G249000.1	Wheat	nucleus, plastid	61.29	64.66
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	61.54	62.47
TraesCS6A01G265600.1	Wheat	extracellular	61.04	61.96
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	39.21	56.83
Solyc03g097110.2.1	Tomato	nucleus	39.21	56.83
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	43.92	56.37
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	38.71	56.32
CDY01476	Canola	cytosol	19.6	55.24
Zm00001d002475_P001	Maize	extracellular	42.43	54.46
VIT_02s0012g01860.t01	Wine grape	cytosol	37.72	53.9
KRH74377	Soybean	endoplasmic reticulum	36.97	53.41
KRH39571	Soybean	nucleus	36.72	52.86
Solyc08g076530.2.1	Tomato	plastid	36.72	52.67
PGSC0003DMT400038377	Potato	cytosol	36.72	52.67
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	35.73	51.8
GSMUA_Achr8P14700_001	Banana	plastid	38.46	50.82
CDX78713	Canola	cytosol	32.75	50.57
CDX70721	Canola	cytosol	32.75	50.57
Bra006373.1-P	Field mustard	cytosol	32.75	50.57
AT5G16840.2	Thale cress	nucleus	32.51	50.38
Bra023585.1-P	Field mustard	nucleus	31.51	50.2
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	34.24	49.64
Zm00001d026150_P001	Maize	cytosol	29.28	49.17
Zm00001d031612_P001	Maize	cytosol	29.28	49.17
CDY01477	Canola	cytosol	36.72	48.84
Bra040177.1-P	Field mustard	nucleus	36.48	48.68
Bra008589.1-P	Field mustard	cytosol	31.51	48.47
CDX69415	Canola	cytosol	31.27	48.46
CDX78795	Canola	nucleus	35.98	47.85
Bra012646.1-P	Field mustard	nucleus	36.97	47.76
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	33.5	47.7
CDX90453	Canola	cytosol	36.48	47.57
CDY60787	Canola	nucleus	35.73	47.52
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	32.75	46.64
AT5G46870.1	Thale cress	nucleus	33.99	46.44
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	35.98	46.33
KRH24024	Soybean	nucleus	33.0	45.55
CDY01473	Canola	nucleus	21.34	43.43
Bra012647.1-P	Field mustard	cytosol	21.34	41.35
CDX90455	Canola	cytosol	21.34	41.35
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.99	41.14
Bra024988.1-P	Field mustard	vacuole	33.99	41.14
Zm00001d035920_P002	Maize	extracellular, vacuole	35.24	41.04
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	33.0	40.92
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.99	40.9
CDX85485	Canola	plastid	31.51	40.32
CDY16974	Canola	plastid	31.76	40.25
PGSC0003DMT400069547	Potato	nucleus	33.75	40.0
Solyc06g072770.2.1	Tomato	nucleus	33.0	36.54
Zm00001d026425_P003	Maize	cytosol	21.34	35.25
Zm00001d013271_P003	Maize	cytosol	24.57	35.23
Zm00001d053093_P001	Maize	cytosol, plastid	25.31	32.18
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	19.85	32.13
CDY38083	Canola	nucleus	31.27	30.07
Zm00001d033453_P001	Maize	cytosol	17.87	21.43

Protein Annotations

EntrezGene:103653942	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:AQK54439.1	ProteinID:AQK54440.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7U7F4
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF4	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002210C2D	EnsemblPlantsGene:Zm00001d051524	EnsemblPlants:Zm00001d051524_P002
EnsemblPlants:Zm00001d051524_T002	:	:	:	:	:

Description

Putative RNA recognition motif containing family protein

Coordinates

chr4:-:161338299..161340781

Molecular Weight (calculated)

43691.8 Da

IEP (calculated)

4.535

GRAVY (calculated)

-0.528

Length

403 amino acids

Sequence
(BLAST)

001: MAGTGTVKVH NVSLKASEQD ISEFFSFSGE IVHVELKSCD ERSQFAYITF RDNQGAERAM LLTGATIEDM AVIITPATDY KLPAFVLADL ESKNTGGMES
101: ALQKAEDIAV SMLAKGFVLG MDAVEKAKAF DEKHQLTSTA TAKVASLDRT MGLSQKFSTG TLVVNEKMKE MDEKYQVAEK TKSALAAAEQ TVSTASSAIM
201: SNRYILTGAA WVTDAYNKVA TTTTDASKSI KERMMAEQEG ANQSGETAKV DLLEISEADE QEWKRHEDDS AKNAVQESPE MTCQESEHQA GERQMTNVAG
301: NSKTGIEEHK NHEGEIAVVA HMQENMDTAE KNPSCHESEV SKANVHDSVL MTEQSEREHN QCEGEFANSH VPGSPVTIPV TVSTIDGNSS NSPKKPDSAE
401: GFL

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.