Factsheet for Os04t0624800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0819900-01
Os05t0461300-01
Os05t0564400-02
Os06t0107000-01
Os07t0239400-01
Os09t0327100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	Os03t0819900-01	AT3G46060.1	21798944
AT4G17720.1	Os05t0461300-01	AT3G46060.1	21798944
AT4G17720.1	Os07t0239400-01	AT3G46060.1	21798944
AT4G17720.1	Os06t0107000-01	AT4G25680.1	21798944
AT4G17720.1	Os05t0564400-02	AT5G60860.1	21798944
AT4G17720.1	Os09t0327100-01	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054082_P001	Maize	cytosol	52.13	69.26
TraesCS6D01G249000.1	Wheat	nucleus, plastid	65.96	64.92
Zm00001d046992_P001	Maize	cytosol	55.32	63.61
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	66.76	63.22
TraesCS6A01G265600.1	Wheat	extracellular	66.22	62.72
OQU85574	Sorghum	nucleus	65.16	62.66
Zm00001d051524_P002	Maize	nucleus	66.49	62.03
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	45.21	61.37
Zm00001d046215_P001	Maize	cytosol	50.0	58.75
Os04t0594400-01	Rice	plasma membrane	48.94	58.6
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	43.09	58.27
Solyc03g097110.2.1	Tomato	nucleus	42.82	57.91
Os06t0112400-01	Rice	plasma membrane	40.16	57.85
VIT_02s0012g01860.t01	Wine grape	cytosol	43.35	57.8
Zm00001d014267_P001	Maize	nucleus	64.63	57.58
KRH74377	Soybean	endoplasmic reticulum	42.29	56.99
KRH39571	Soybean	nucleus	42.29	56.79
Solyc08g076530.2.1	Tomato	plastid	42.02	56.23
PGSC0003DMT400038377	Potato	cytosol	42.02	56.23
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	41.22	55.76
CDY01476	Canola	cytosol	21.01	55.24
GSMUA_Achr8P14700_001	Banana	plastid	44.15	54.43
Bra023585.1-P	Field mustard	nucleus	35.37	52.57
AT5G16840.2	Thale cress	nucleus	36.17	52.31
KRH24024	Soybean	nucleus	40.43	52.05
Bra006373.1-P	Field mustard	cytosol	35.9	51.72
CDX78713	Canola	cytosol	35.9	51.72
CDY01477	Canola	cytosol	41.49	51.49
Bra040177.1-P	Field mustard	nucleus	40.96	50.99
CDX78795	Canola	nucleus	40.96	50.83
Bra012646.1-P	Field mustard	nucleus	42.02	50.64
CDX70721	Canola	cytosol	35.11	50.57
AT5G46870.1	Thale cress	nucleus	39.63	50.51
CDY60787	Canola	nucleus	40.69	50.49
CDX90453	Canola	cytosol	41.49	50.49
CDX69415	Canola	cytosol	34.84	50.38
Os03t0713600-01	Rice	cytosol	38.03	50.35
Bra008589.1-P	Field mustard	cytosol	34.84	50.0
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	41.22	49.52
CDY01473	Canola	nucleus	24.73	46.97
CDX90455	Canola	cytosol	25.8	46.63
Bra012647.1-P	Field mustard	cytosol	25.8	46.63
Bra024988.1-P	Field mustard	vacuole	39.63	44.74
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.63	44.48
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	39.1	44.14
PGSC0003DMT400069547	Potato	nucleus	38.3	42.35
CDX85485	Canola	plastid	35.11	41.9
CDY16974	Canola	plastid	35.11	41.51
Solyc06g072770.2.1	Tomato	nucleus	37.5	38.74
Os03t0748900-01	Rice	cytosol	27.39	37.05
Os11t0549537-00	Rice	mitochondrion, plastid	23.4	36.36
CDY38083	Canola	nucleus	34.57	31.03
Os04t0641400-02	Rice	plastid	23.14	30.31

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4337057	EMBL:AK070522	ProteinID:BAF15848.1	ProteinID:BAS91101.1
ProteinID:CAE03512.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os04g0624800	EnsemblPlants:Os04t0624800-01	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44136	PANTHER:PTHR44136:SF4	UniProt:Q7XPQ3	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000021C746	RefSeq:XP_015634321.1	RefSeq:XP_015634322.1	RefSeq:XP_015634324.1	:

Description

Aldo/keto reductase domain containing protein. (Os04t0624800-01)

Coordinates

chr4:-:31764133..31766854

Molecular Weight (calculated)

40861.1 Da

IEP (calculated)

5.667

GRAVY (calculated)

-0.565

Length

376 amino acids

Sequence
(BLAST)

001: MVSTIKVHNV SLEASEQDIR EFFSFSGVIV HVEMQSGDER SQFAYITFED DEGAERAMLL TGATIVDMSV IITPATNYQL PAAVLADIES KNAGGMESAL
101: RKAEDAVVSM LAKGFVLGKD ALERAKSFDE KHQLTSTATA KVTSLDRKMG LSQKFSTGTL VVNEKMKEMD QKYQVAEKTK SALAAAEQTV STAGSAIMSN
201: RYILTGAAWV TDAYSKVATT ATDAGAKSKE MVVAEQDDKH QDDKPAKDYS PISSKEFVQE GKHQEGERPK KNMPEKPEMG KRELENQEAA IPTAHAQENA
301: QITGKEHKHQ EADLPKADIP GSFTMAAKSE KHRNPYSELS KTHIPGSPAT IPVCTATTDV NSTKTPKKPE NAEGFI

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.