Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046215_P001 | Maize | cytosol | 73.22 | 96.56 |
| Zm00001d046992_P001 | Maize | cytosol | 74.64 | 96.33 |
| Zm00001d051524_P002 | Maize | nucleus | 90.52 | 94.79 |
| Zm00001d054082_P001 | Maize | cytosol | 63.51 | 94.7 |
| OQU85574 | Sorghum | nucleus | 79.62 | 85.93 |
| Os04t0624800-01 | Rice | nucleus | 57.58 | 64.63 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 56.16 | 62.04 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 56.16 | 59.7 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 56.16 | 59.7 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 36.97 | 56.12 |
| Solyc03g097110.2.1 | Tomato | nucleus | 36.97 | 56.12 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 41.47 | 55.73 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 36.49 | 55.6 |
| CDY01476 | Canola | cytosol | 18.25 | 53.85 |
| Zm00001d002475_P001 | Maize | extracellular | 39.81 | 53.5 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 35.55 | 53.19 |
| KRH74377 | Soybean | endoplasmic reticulum | 34.83 | 52.69 |
| KRH39571 | Soybean | nucleus | 34.6 | 52.14 |
| Solyc08g076530.2.1 | Tomato | plastid | 34.6 | 51.96 |
| PGSC0003DMT400038377 | Potato | cytosol | 34.6 | 51.96 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 33.41 | 50.72 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 36.49 | 50.49 |
| CDX78713 | Canola | cytosol | 31.04 | 50.19 |
| CDX70721 | Canola | cytosol | 31.04 | 50.19 |
| Bra006373.1-P | Field mustard | cytosol | 31.04 | 50.19 |
| AT5G16840.2 | Thale cress | nucleus | 30.81 | 50.0 |
| Bra023585.1-P | Field mustard | nucleus | 29.86 | 49.8 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 32.7 | 49.64 |
| Zm00001d031612_P001 | Maize | cytosol | 27.49 | 48.33 |
| Zm00001d026150_P001 | Maize | cytosol | 27.49 | 48.33 |
| Bra008589.1-P | Field mustard | cytosol | 29.86 | 48.09 |
| CDX69415 | Canola | cytosol | 29.62 | 48.08 |
| CDY01477 | Canola | cytosol | 34.36 | 47.85 |
| Bra040177.1-P | Field mustard | nucleus | 34.12 | 47.68 |
| Bra012646.1-P | Field mustard | nucleus | 34.83 | 47.12 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 31.52 | 47.0 |
| CDX90453 | Canola | cytosol | 34.36 | 46.93 |
| CDX78795 | Canola | nucleus | 33.65 | 46.86 |
| CDY60787 | Canola | nucleus | 33.41 | 46.53 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 30.81 | 45.94 |
| AT5G46870.1 | Thale cress | nucleus | 31.99 | 45.76 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 33.89 | 45.69 |
| KRH24024 | Soybean | nucleus | 30.81 | 44.52 |
| CDY01473 | Canola | nucleus | 19.91 | 42.42 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 31.99 | 41.54 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 32.46 | 41.14 |
| Bra024988.1-P | Field mustard | vacuole | 32.46 | 41.14 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 32.46 | 40.9 |
| CDX90455 | Canola | cytosol | 20.14 | 40.87 |
| Bra012647.1-P | Field mustard | cytosol | 20.14 | 40.87 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 33.18 | 40.46 |
| CDX85485 | Canola | plastid | 29.86 | 40.0 |
| CDY16974 | Canola | plastid | 30.09 | 39.94 |
| PGSC0003DMT400069547 | Potato | nucleus | 31.52 | 39.12 |
| Solyc06g072770.2.1 | Tomato | nucleus | 30.57 | 35.44 |
| Zm00001d013271_P003 | Maize | cytosol | 23.22 | 34.88 |
| Zm00001d026425_P003 | Maize | cytosol | 20.14 | 34.84 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 25.12 | 33.44 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 18.72 | 31.73 |
| CDY38083 | Canola | nucleus | 29.62 | 29.83 |
| Zm00001d033453_P001 | Maize | cytosol | 17.54 | 22.02 |
Protein Annotations
| EnsemblPlants:Zm00001d014267_P001 | EnsemblPlants:Zm00001d014267_T001 | EnsemblPlantsGene:Zm00001d014267 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF4 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQK65719.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000842CE3A | UniProt:A0A1D6GRI7 | MapMan:35.1 | : |
Description
Binding partner of ACD11 1
Coordinates
chr5:+:38551270..38553405
Molecular Weight (calculated)
46073.9 Da
IEP (calculated)
4.778
GRAVY (calculated)
-0.526
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MYLSKLPIDS CRPTFFKATM AGTGTVKIHN VSLKASEQDI SEFFSFSGEI VHVELKSCDE RSQSAYITFR DNQGAERAML LTGATIEDMA VIITPATDYK
101: LPAFVLADLE SKNTGGMESA LQKAEDIAVS MLAKGFVLGM DTVEKAKAFD EKHQLTSTAT AKVASLDRTM GLSQKFSTGT LVVNEKMKEM DEKYQVAEKT
201: KSALAAAEQT ISTASSVIMS NRYVLTGAAW VTDAYNKVAT TTTDASKSIK ERMMAEQEGA NQSGETTKVD LLEISEADEK EWKRHKDDST KNVVQESPEM
301: TCQESEHQAG ERQMTNVAGN SKTGIEEQKN HEGEIAVVSH MQENIDTAEK DPSCHESEVS KANVHDSVLM TKQSEREHNQ PEGEFANTHV PGSPVTILVT
401: VSTIDRNSSN GPKKPDSAEG FL
101: LPAFVLADLE SKNTGGMESA LQKAEDIAVS MLAKGFVLGM DTVEKAKAFD EKHQLTSTAT AKVASLDRTM GLSQKFSTGT LVVNEKMKEM DEKYQVAEKT
201: KSALAAAEQT ISTASSVIMS NRYVLTGAAW VTDAYNKVAT TTTDASKSIK ERMMAEQEGA NQSGETTKVD LLEISEADEK EWKRHKDDST KNVVQESPEM
301: TCQESEHQAG ERQMTNVAGN SKTGIEEQKN HEGEIAVVSH MQENIDTAEK DPSCHESEVS KANVHDSVLM TKQSEREHNQ PEGEFANTHV PGSPVTILVT
401: VSTIDRNSSN GPKKPDSAEG FL
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.