Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012646.1-P | Field mustard | nucleus | 99.03 | 98.08 |
| CDY01477 | Canola | cytosol | 94.82 | 96.7 |
| CDY01476 | Canola | cytosol | 42.39 | 91.61 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 91.59 | 90.42 |
| CDY01473 | Canola | nucleus | 57.93 | 90.4 |
| CDY60787 | Canola | nucleus | 86.41 | 88.12 |
| CDX78795 | Canola | nucleus | 86.41 | 88.12 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 64.72 | 70.92 |
| KRH39571 | Soybean | nucleus | 62.78 | 69.29 |
| KRH74377 | Soybean | endoplasmic reticulum | 62.46 | 69.18 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 54.37 | 68.85 |
| Solyc08g076530.2.1 | Tomato | plastid | 62.14 | 68.33 |
| PGSC0003DMT400038377 | Potato | cytosol | 61.81 | 67.97 |
| CDX90455 | Canola | cytosol | 45.63 | 67.79 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 72.49 | 66.87 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 71.84 | 66.67 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 59.87 | 66.55 |
| EER89059 | Sorghum | cytosol | 52.75 | 60.59 |
| Os06t0112400-01 | Rice | plasma membrane | 50.81 | 60.15 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 50.49 | 59.32 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 50.49 | 58.65 |
| TraesCS7D01G027100.1 | Wheat | plastid | 50.49 | 58.65 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 52.75 | 58.63 |
| CDX70721 | Canola | cytosol | 47.57 | 56.32 |
| CDX78713 | Canola | cytosol | 47.57 | 56.32 |
| Os04t0594400-01 | Rice | plasma membrane | 55.34 | 54.46 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 53.72 | 54.43 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 48.87 | 54.32 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 55.02 | 54.14 |
| EES12769 | Sorghum | cytosol | 54.69 | 53.82 |
| Zm00001d002475_P001 | Maize | extracellular | 54.37 | 53.5 |
| CDX69415 | Canola | cytosol | 44.98 | 53.46 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 53.72 | 52.7 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 53.4 | 52.05 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 53.07 | 51.73 |
| TraesCS7A01G030900.2 | Wheat | plastid | 50.49 | 49.52 |
| Zm00001d026150_P001 | Maize | cytosol | 37.86 | 48.75 |
| Zm00001d031612_P001 | Maize | cytosol | 37.86 | 48.75 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 53.07 | 47.4 |
| Zm00001d054082_P001 | Maize | cytosol | 42.39 | 46.29 |
| CDY01872 | Canola | cytosol, plastid | 41.1 | 44.72 |
| CDY16974 | Canola | plastid | 45.63 | 44.34 |
| CDX85485 | Canola | plastid | 44.98 | 44.13 |
| Os04t0624800-01 | Rice | nucleus | 50.49 | 41.49 |
| CDY38176 | Canola | cytosol | 35.28 | 41.44 |
| Zm00001d046992_P001 | Maize | cytosol | 43.69 | 41.28 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 50.49 | 40.84 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.95 | 40.6 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 42.39 | 40.31 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 50.81 | 39.55 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 50.16 | 39.04 |
| OQU85574 | Sorghum | nucleus | 49.19 | 38.87 |
| CDX96860 | Canola | nucleus | 29.77 | 37.7 |
| CDY62016 | Canola | nucleus | 28.48 | 37.61 |
| CDY49093 | Canola | cytosol | 29.77 | 37.55 |
| CDX84035 | Canola | nucleus | 29.13 | 36.89 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 9.06 | 36.84 |
| Zm00001d051524_P002 | Maize | nucleus | 47.57 | 36.48 |
| Zm00001d014267_P001 | Maize | nucleus | 46.93 | 34.36 |
| CDY38083 | Canola | nucleus | 44.98 | 33.17 |
| Zm00001d046215_P001 | Maize | cytosol | 33.33 | 32.19 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 24.92 | 30.56 |
| CDX74287 | Canola | cytosol | 24.92 | 30.56 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078DTB9 | EnsemblPlants:CDX90453 | ProteinID:CDX90453 | ProteinID:CDX90453.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00151064001 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDC56C | SEG:seg |
Description
BnaA03g43280D
Coordinates
chrLK031863:+:306013..307916
Molecular Weight (calculated)
33370.3 Da
IEP (calculated)
6.011
GRAVY (calculated)
-0.514
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTTVKVSNV SLGATDRDLK EFFSFSGDIL YLETQSETER SKLAYVTFKD LQGAETAVLL SGATIVDSSV IVTMAPDYQL SPEALASLEP KESSKSPRAG
101: DSVLRKAEDV VSNMLAKGFI LGKDAIAKAK SVDEKHQLTS TASAKVASLD KKLGFTDKIN TGTVVVGDKV REVDHKYQVS EKTKSAIAAA EQTVSNAGSA
201: IMKNRYVLTG ATWVTGAFNK VAKAAEEVGQ KAKEKVGMAE EEDKRKVVDE FARVHLSESP KAPSSKDEVV HEPKLSESPE PKESEHHEPQ QQQQPQQQQS
301: PPPVAPAQP
101: DSVLRKAEDV VSNMLAKGFI LGKDAIAKAK SVDEKHQLTS TASAKVASLD KKLGFTDKIN TGTVVVGDKV REVDHKYQVS EKTKSAIAAA EQTVSNAGSA
201: IMKNRYVLTG ATWVTGAFNK VAKAAEEVGQ KAKEKVGMAE EEDKRKVVDE FARVHLSESP KAPSSKDEVV HEPKLSESPE PKESEHHEPQ QQQQPQQQQS
301: PPPVAPAQP
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.