CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039914.1-P	Field mustard	cytosol	65.79	19.01
CDY38176	Canola	cytosol	65.79	19.01
CDY01476	Canola	cytosol	35.53	18.88
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	64.47	18.42
AT5G32450.1	Thale cress	cytosol	60.53	17.23
Solyc10g076890.1.1	Tomato	cytosol	56.58	15.75
VIT_08s0032g00290.t01	Wine grape	cytosol	55.26	15.67
PGSC0003DMT400018578	Potato	cytosol	55.26	15.27
GSMUA_Achr4P10680_001	Banana	cytosol	52.63	15.09
GSMUA_Achr8P04640_001	Banana	cytosol	52.63	15.04
EER93456	Sorghum	cytosol	51.32	14.13
Zm00001d013271_P003	Maize	cytosol	51.32	13.88
KRH06674	Soybean	cytosol	50.0	13.77
TraesCS5B01G392900.1	Wheat	cytosol	48.68	13.6
TraesCS5A01G387800.1	Wheat	cytosol	48.68	13.6
TraesCS5D01G397700.2	Wheat	cytosol	48.68	13.36
Os03t0748900-01	Rice	cytosol	48.68	13.31
CDX78713	Canola	cytosol	42.11	12.26
CDX70721	Canola	cytosol	42.11	12.26
CDX69415	Canola	cytosol	39.47	11.54
CDY49093	Canola	cytosol	34.21	10.61
HORVU5Hr1G095000.1	Barley	nucleus	48.68	10.03
CDX85485	Canola	plastid	40.79	9.84
CDY62016	Canola	nucleus	30.26	9.83
CDY16974	Canola	plastid	40.79	9.75
CDX96860	Canola	nucleus	30.26	9.43
CDX84035	Canola	nucleus	30.26	9.43
CDY01872	Canola	cytosol, plastid	34.21	9.15
CDX91958	Canola	cytosol, nucleus, plastid	30.26	9.13
CDX74287	Canola	cytosol	30.26	9.13
CDX90453	Canola	cytosol	36.84	9.06
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.47	8.96
CDX78795	Canola	nucleus	35.53	8.91
CDY01477	Canola	cytosol	35.53	8.91
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	38.16	8.71
CDY60787	Canola	nucleus	34.21	8.58
KRG94865	Soybean	cytosol	27.63	8.5
CDY38083	Canola	nucleus	39.47	7.16
GSMUA_AchrUn_...	Banana	cytosol	9.21	4.35
CDX90455	Canola	cytosol	7.89	2.88
Zm00001d033453_P001	Maize	cytosol	10.53	2.38
CDY01473	Canola	nucleus	5.26	2.02

Protein Annotations

EnsemblPlants:CDY60084	EnsemblPlantsGene:GSBRNA2T00028143001	Gene3D:3.30.70.330	GO:A0A078J8Z8	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44136	PANTHER:PTHR44136:SF3	PFscan:PS50102	ProteinID:CDY60084	ProteinID:CDY60084.1
SUPFAM:SSF54928	UniParc:UPI0004EDB8BF	UniProt:A0A078J8Z8	MapMan:35.2	:	:

Description

BnaCnng35710DBnaCnng35710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8Z8]

Coordinates

chrLK033838:-:32169..32479

Molecular Weight (calculated)

8566.3 Da

IEP (calculated)

4.868

GRAVY (calculated)

0.380

Length

76 amino acids

Sequence
(BLAST)

1: MQTRSVNVSD LATVRDIQEF FSFSGNIDHI DILKNAEQSR VAFVSFTEPK ALEIALFLFV CYITSSFVNC IKSVNV

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.