Factsheet for TraesCS5B01G392900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G387800.1	Wheat	cytosol	97.43	97.43
TraesCS5D01G397700.2	Wheat	cytosol	95.96	94.22
Os03t0748900-01	Rice	cytosol	88.6	86.69
EER93456	Sorghum	cytosol	85.66	84.42
Zm00001d013271_P003	Maize	cytosol	84.19	81.49
HORVU5Hr1G095000.1	Barley	nucleus	98.16	72.36
GSMUA_Achr4P10680_001	Banana	cytosol	68.01	69.81
VIT_08s0032g00290.t01	Wine grape	cytosol	65.44	66.42
Solyc10g076890.1.1	Tomato	cytosol	66.18	65.93
PGSC0003DMT400018578	Potato	cytosol	66.18	65.45
GSMUA_Achr8P04640_001	Banana	cytosol	63.97	65.41
Bra039914.1-P	Field mustard	cytosol	62.13	64.26
CDY38176	Canola	cytosol	62.13	64.26
KRH06674	Soybean	cytosol	64.34	63.41
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	61.4	62.78
KRG94865	Soybean	cytosol	56.25	61.94
AT5G32450.1	Thale cress	cytosol	58.82	59.93
CDY60084	Canola	cytosol, nucleus, plastid	13.6	48.68
GSMUA_AchrUn_...	Banana	cytosol	26.47	44.72
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	42.28	40.49
Zm00001d033453_P001	Maize	cytosol	44.12	35.71
TraesCS2B01G466100.1	Wheat	extracellular	41.18	35.33
TraesCS2B01G551100.1	Wheat	nucleus	31.62	35.25
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	38.24	26.2

Protein Annotations

EnsemblPlants:TraesCS5B01G392900.1	EnsemblPlantsGene:TraesCS5B01G392900	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	ncoils:Coil
PANTHER:PTHR32343	PANTHER:PTHR32343:SF9	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:571473140..571476563

Molecular Weight (calculated)

29306.5 Da

IEP (calculated)

9.940

GRAVY (calculated)

-0.294

Length

272 amino acids

Sequence
(BLAST)

001: MEEGRRGTRT VRVRNISDLA GEREVREFFS FSGEIDHVDI RPDGAAAGRT AYVTFKDAKA LEIALLLSGA TIVDRVVNIT SAEDYIYIPV NEQQLVVNEA
101: TSTAPTADLE QPTEANTSPT SVYASKAHDV MTTVIARGSA IRQDAVNKAK SFDEKHQLRA NASARISSFD RRVGLSEKLN TGISVVNEKV KTVDQRLHVS
201: DKTMAALLAA ERKLNDTGSA VKTNRYVSAG TSWLNGAFSK VAKAGHVAGS RTREKFQIAV SNISAKGPAV VA

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.