Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 94.71 | 98.43 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 93.95 | 93.95 |
| Zm00001d054082_P001 | Maize | cytosol | 47.61 | 66.78 |
| Os04t0624800-01 | Rice | nucleus | 63.22 | 66.76 |
| OQU85574 | Sorghum | nucleus | 61.46 | 62.4 |
| Zm00001d051524_P002 | Maize | nucleus | 62.47 | 61.54 |
| Zm00001d046992_P001 | Maize | cytosol | 50.13 | 60.86 |
| Zm00001d046215_P001 | Maize | cytosol | 47.1 | 58.44 |
| CDY01476 | Canola | cytosol | 20.4 | 56.64 |
| Zm00001d014267_P001 | Maize | nucleus | 59.7 | 56.16 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 39.8 | 56.03 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 39.04 | 55.96 |
| KRH74377 | Soybean | endoplasmic reticulum | 39.29 | 55.91 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 39.04 | 55.76 |
| Solyc03g097110.2.1 | Tomato | nucleus | 38.79 | 55.4 |
| KRH39571 | Soybean | nucleus | 39.04 | 55.36 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 43.83 | 54.89 |
| Solyc08g076530.2.1 | Tomato | plastid | 38.54 | 54.45 |
| PGSC0003DMT400038377 | Potato | cytosol | 38.54 | 54.45 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 36.78 | 52.52 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 39.8 | 51.8 |
| CDY01477 | Canola | cytosol | 39.29 | 51.49 |
| CDX78795 | Canola | nucleus | 38.54 | 50.49 |
| Bra040177.1-P | Field mustard | nucleus | 38.29 | 50.33 |
| Bra012646.1-P | Field mustard | nucleus | 39.55 | 50.32 |
| AT5G46870.1 | Thale cress | nucleus | 37.28 | 50.17 |
| CDY60787 | Canola | nucleus | 38.29 | 50.16 |
| CDX90453 | Canola | cytosol | 39.04 | 50.16 |
| TraesCS4B01G049100.1 | Wheat | cytosol, nucleus, plastid | 35.01 | 48.94 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 38.54 | 48.88 |
| Bra023585.1-P | Field mustard | nucleus | 30.48 | 47.83 |
| AT5G16840.2 | Thale cress | nucleus | 30.98 | 47.31 |
| KRH24024 | Soybean | nucleus | 34.76 | 47.26 |
| CDX69415 | Canola | cytosol | 30.73 | 46.92 |
| CDX78713 | Canola | cytosol | 30.73 | 46.74 |
| Bra006373.1-P | Field mustard | cytosol | 30.73 | 46.74 |
| Bra008589.1-P | Field mustard | cytosol | 30.73 | 46.56 |
| CDY01473 | Canola | nucleus | 23.17 | 46.46 |
| CDX70721 | Canola | cytosol | 30.23 | 45.98 |
| Bra024988.1-P | Field mustard | vacuole | 37.78 | 45.05 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 37.78 | 45.05 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 37.78 | 44.78 |
| Bra012647.1-P | Field mustard | cytosol | 23.43 | 44.71 |
| CDX90455 | Canola | cytosol | 23.43 | 44.71 |
| PGSC0003DMT400069547 | Potato | nucleus | 36.27 | 42.35 |
| Solyc06g072770.2.1 | Tomato | nucleus | 36.27 | 39.56 |
| CDY16974 | Canola | plastid | 30.98 | 38.68 |
| CDX85485 | Canola | plastid | 30.48 | 38.41 |
| TraesCS5B01G392900.1 | Wheat | cytosol | 26.2 | 38.24 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 19.9 | 32.38 |
| CDY38083 | Canola | nucleus | 30.48 | 28.88 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G292900.1 | EnsemblPlantsGene:TraesCS6B01G292900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF4 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:526715693..526717144
Molecular Weight (calculated)
43126.5 Da
IEP (calculated)
4.623
GRAVY (calculated)
-0.517
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MLINSFMFIP FFKTSMFSTV KVHNVSLQAS ERVIKEFFSF SGDIVHVEMQ SGDKRSQFAY ITFRDEQEAE RAMLLTGATI VDMAIIITPA TNYQLPAAVL
101: ADLESKSPSS IEAALRKAED VAGSMLAKGF ILGKDAVEKA KTFDETHQLT STASAKVSSI DKSLGLSEKI STSTIVVNEK MKEMDEKYQV AEKTKSALVA
201: AEQTVSTAGS KIMRHRYILT GAAWVTGAYS KVATTATEAY NKERAMAEQE DELAKSSEEA GQESKCQESD PAKVPVPENT ETGQMADQEG ECPKTNKPED
301: TEMGNGEQKG QDAEIAKAQT QENTGITAEE HKHREAELPK ASTPESFLMT EQTEQEHKQP VTEVANSDIP SSPVTIPVCM ATDDANSSNS PKKPGPA
101: ADLESKSPSS IEAALRKAED VAGSMLAKGF ILGKDAVEKA KTFDETHQLT STASAKVSSI DKSLGLSEKI STSTIVVNEK MKEMDEKYQV AEKTKSALVA
201: AEQTVSTAGS KIMRHRYILT GAAWVTGAYS KVATTATEAY NKERAMAEQE DELAKSSEEA GQESKCQESD PAKVPVPENT ETGQMADQEG ECPKTNKPED
301: TEMGNGEQKG QDAEIAKAQT QENTGITAEE HKHREAELPK ASTPESFLMT EQTEQEHKQP VTEVANSDIP SSPVTIPVCM ATDDANSSNS PKKPGPA
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.