Factsheet for TraesCS1D01G013200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3D01G106500.1	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	99.51	99.02
TraesCS1B01G019100.2	Wheat	golgi	99.02	98.54
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	96.08	87.11
EES18842	Sorghum	cytosol	87.25	86.83
Zm00001d035741_P002	Maize	cytosol	86.76	86.34
KRH06045	Soybean	cytosol	79.9	81.09
VIT_12s0035g01150.t01	Wine grape	vacuole	79.9	80.69
KRH26285	Soybean	endoplasmic reticulum	78.92	80.1
GSMUA_Achr10P...	Banana	cytosol	76.96	77.72
PGSC0003DMT400064019	Potato	cytosol, extracellular	76.47	77.23
CDY47919	Canola	vacuole	77.94	77.18
Bra038676.1-P	Field mustard	vacuole	77.94	77.18
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	75.98	76.73
CDY56593	Canola	cytosol	76.47	75.73
CDX73855	Canola	cytosol	76.47	75.73
AT3G11730.1	Thale cress	cytosol	75.98	75.61
Bra001418.1-P	Field mustard	cytosol, extracellular	75.98	75.24
TraesCS3D01G056500.1	Wheat	golgi	72.55	72.91
TraesCS3D01G056600.1	Wheat	plastid	72.55	72.91
TraesCS2D01G309200.2	Wheat	cytosol	75.49	72.3
TraesCS3D01G206600.1	Wheat	cytosol	73.53	67.87
GSMUA_Achr6P17450_001	Banana	cytosol	79.41	64.29
TraesCS5D01G489700.1	Wheat	cytosol	53.43	50.93
TraesCS1D01G285200.1	Wheat	cytosol	52.94	50.47
TraesCS3D01G350000.3	Wheat	cytosol	53.92	46.22
TraesCS2D01G331300.1	Wheat	golgi, plastid	44.12	42.86
TraesCS6D01G188500.1	Wheat	golgi	44.12	42.86
TraesCS5D01G264100.1	Wheat	cytosol	40.69	39.15
TraesCS3D01G495900.1	Wheat	cytosol	33.33	37.99

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS1D01G013200	EnsemblPlants:TraesCS1D01G013200.1	TIGR:cd01869	:	:	:

Description

No Description!

Coordinates

chr1D:+:6774629..6778047

Molecular Weight (calculated)

22833.0 Da

IEP (calculated)

5.097

GRAVY (calculated)

-0.235

Length

204 amino acids

Sequence
(BLAST)

001: MSTSEYDYLF KLLLIGDSSV GKSCLLLRFA DDAYVDTYIS TIGVDFKIRT VELDGKSVKL QIWDTAGQER FRTITSSYYR GAHGIIIVYD VTDRESFNNV
101: KQWLSEIDRY ASDSVCKLLV GNKCDLVDSK VVDTEEAKAF AESLGMNFLE TSAKEAINVE TAFLTMSSEI KNKMASQPTA ERKSTVHVHM KGQPIQQQNS
201: SCCS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.