Factsheet for TraesCS6D01G188500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G230400.2	Wheat	cytosol	100.0	100.0
HORVU6Hr1G051470.1	Barley	cytosol	100.0	100.0
TraesCS6A01G207100.1	Wheat	cytosol	99.52	99.52
Os02t0586400-01	Rice	plasma membrane	99.05	99.05
EES05332	Sorghum	cytosol	98.1	98.1
Solyc10g007700.2.1	Tomato	plastid	92.38	91.94
TraesCS2D01G331300.1	Wheat	golgi, plastid	91.9	91.9
PGSC0003DMT400020113	Potato	cytosol	91.9	91.47
Solyc12g011130.1.1	Tomato	cytosol	91.9	91.47
PGSC0003DMT400079822	Potato	cytosol	91.9	91.47
CDY58166	Canola	cytosol	91.43	91.43
CDY50126	Canola	cytosol	91.43	91.43
Bra021065.1-P	Field mustard	cytosol	91.43	91.43
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	98.1	91.15
AT4G17160.1	Thale cress	cytosol	79.05	80.98
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	51.9	78.42
Zm00001d050915_P004	Maize	cytosol	89.05	75.4
TraesCS3D01G495900.1	Wheat	cytosol	59.05	69.27
TraesCS5D01G264100.1	Wheat	cytosol	63.81	63.21
TraesCS3D01G056500.1	Wheat	golgi	46.67	48.28
TraesCS3D01G056600.1	Wheat	plastid	44.76	46.31
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	42.86	44.12
TraesCS3D01G206600.1	Wheat	cytosol	45.71	43.44
TraesCS2D01G309200.2	Wheat	cytosol	42.38	41.78
TraesCS5D01G489700.1	Wheat	cytosol	41.9	41.12
TraesCS1D01G285200.1	Wheat	cytosol	41.9	41.12
TraesCS3D01G350000.3	Wheat	cytosol	42.86	37.82

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS6D01G188500
EnsemblPlants:TraesCS6D01G188500.1	TIGR:cd01866	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:256722450..256725025

Molecular Weight (calculated)

23062.4 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.195

Length

210 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTVMLIGNK CDLSHRRAVS YEEGEQFAKE HGLVFMEASA KTAQNVEEAF IKTAGTIYKK IQDGVFDVSN ESYGIKVGYA VPNASGGGAG
201: SSSQAGGCCS

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.