Factsheet for Zm00001d017026_P003

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05332	Sorghum	cytosol	92.04	99.05
TraesCS6D01G188500.1	Wheat	golgi	91.15	98.1
TraesCS6B01G230400.2	Wheat	cytosol	91.15	98.1
HORVU6Hr1G051470.1	Barley	cytosol	91.15	98.1
TraesCS6A01G207100.1	Wheat	cytosol	90.71	97.62
Os02t0586400-01	Rice	plasma membrane	90.27	97.14
Zm00001d025660_P001	Maize	plasma membrane, plastid	86.28	92.86
Solyc10g007700.2.1	Tomato	plastid	84.51	90.52
PGSC0003DMT400020113	Potato	cytosol	84.07	90.05
PGSC0003DMT400079822	Potato	cytosol	84.07	90.05
Solyc12g011130.1.1	Tomato	cytosol	84.07	90.05
Bra021065.1-P	Field mustard	cytosol	83.63	90.0
CDY58166	Canola	cytosol	83.63	90.0
CDY50126	Canola	cytosol	83.63	90.0
AT4G17160.1	Thale cress	cytosol	72.57	80.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	48.23	78.42
Zm00001d050915_P004	Maize	cytosol	82.74	75.4
Zm00001d003347_P003	Maize	cytosol	53.1	64.17
Zm00001d003588_P002	Maize	cytosol, extracellular	32.3	48.99
Zm00001d011162_P002	Maize	plasma membrane	42.92	47.78
Zm00001d035741_P002	Maize	cytosol	39.82	43.9
Zm00001d005215_P001	Maize	cytosol	28.32	42.11
Zm00001d010538_P005	Maize	cytosol	38.5	40.47
Zm00001d034638_P001	Maize	cytosol	38.5	40.47
Zm00001d038380_P001	Maize	extracellular, plasma membrane	38.5	40.47
Zm00001d051336_P001	Maize	plastid	39.82	33.09
Zm00001d003789_P002	Maize	extracellular, plasma membrane	38.5	32.95
Zm00001d017456_P003	Maize	cytosol	40.27	22.69

Protein Annotations

EntrezGene:100217047	MapMan:22.8.1.2	Gene3D:3.40.50.300	UniProt:A0A1D6HBR3	ProteinID:AQK72141.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00084319DA	EnsemblPlantsGene:Zm00001d017026	EnsemblPlants:Zm00001d017026_P003	EnsemblPlants:Zm00001d017026_T003	SEG:seg

Description

Ras-related protein RABB1a

Coordinates

chr5:+:183079750..183092535

Molecular Weight (calculated)

24848.6 Da

IEP (calculated)

7.962

GRAVY (calculated)

-0.130

Length

226 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI ENKPIKLQIW DTVRPSPLSF SLFPALFMAG QESFRSITRS YYRGAAGALL
101: VYDITRRETF NHLASWLEDA RQHANANMTV MLIGNKCDLS HRRAVSYEEG EQFAKEHGLV FMEASAKTAQ NVEEAFIKTA GTIYKKIQDG IFDVSNESNG
201: IKVGYAVPNS SGGGAGSSSQ AGGCCS

Best Arabidopsis Sequence Match ( AT4G17160.1 )
(BLAST)

001: MSYAYRFKYI IIGDTGVGKS CLLLKFTDKR FQAVHDLTIG VEFGAKTITI DNKPIKLQIW DTAGQESFRS VTRSYYRGRA GTLLVYDITR RETFNHLASW
101: LEEARQHASE NMTTMLIGNK CDLEDKRTVS TEEGEQFARE HGLIFMEASA KTAHNVEEAF VETAATIYKR IQDGVVDEAN EPGITPGPFG GKDASSSQQR
201: RGCCG

Arabidopsis Description

RABB1ARABB1a [Source:UniProtKB/TrEMBL;Acc:A0A178UXW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.