Factsheet for Zm00001d050915_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05332	Sorghum	cytosol	75.81	89.52
TraesCS6D01G188500.1	Wheat	golgi	75.4	89.05
TraesCS6B01G230400.2	Wheat	cytosol	75.4	89.05
TraesCS6A01G207100.1	Wheat	cytosol	75.4	89.05
HORVU6Hr1G051470.1	Barley	cytosol	75.4	89.05
Os02t0586400-01	Rice	plasma membrane	75.4	89.05
Zm00001d025660_P001	Maize	plasma membrane, plastid	73.39	86.67
Solyc10g007700.2.1	Tomato	plastid	73.39	86.26
PGSC0003DMT400020113	Potato	cytosol	72.98	85.78
PGSC0003DMT400079822	Potato	cytosol	72.98	85.78
Solyc12g011130.1.1	Tomato	cytosol	72.98	85.78
Bra021065.1-P	Field mustard	cytosol	72.58	85.71
CDY58166	Canola	cytosol	72.58	85.71
CDY50126	Canola	cytosol	72.58	85.71
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	75.4	82.74
AT4G17160.1	Thale cress	cytosol	64.52	78.05
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	43.55	77.7
Zm00001d003347_P003	Maize	cytosol	43.15	57.22
Zm00001d003588_P002	Maize	cytosol, extracellular	28.63	47.65
Zm00001d011162_P002	Maize	plasma membrane	38.71	47.29
Zm00001d035741_P002	Maize	cytosol	36.69	44.39
Zm00001d005215_P001	Maize	cytosol	25.4	41.45
Zm00001d010538_P005	Maize	cytosol	34.27	39.53
Zm00001d038380_P001	Maize	extracellular, plasma membrane	34.27	39.53
Zm00001d034638_P001	Maize	cytosol	33.87	39.07
Zm00001d051336_P001	Maize	plastid	36.29	33.09
Zm00001d003789_P002	Maize	extracellular, plasma membrane	34.68	32.58
Zm00001d017456_P003	Maize	cytosol	36.69	22.69

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EntrezGene:542765	UniProt:A0A1D6Q3U2	ProteinID:AQK53229.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000844D644	EnsemblPlantsGene:Zm00001d050915	EnsemblPlants:Zm00001d050915_P004	EnsemblPlants:Zm00001d050915_T004

Description

ypt homolog3 ypt homolog3

Coordinates

chr4:+:130729944..130733892

Molecular Weight (calculated)

27919.7 Da

IEP (calculated)

7.609

GRAVY (calculated)

-0.073

Length

248 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTVMLIGNK CDLSHRRAVS YEEGEQFAKE HGLVFMEASA KTAQNVEEAF IKTAGTIYKK IQDGIFDVSN EFGMEGVHVF RMNCPGAGPT
201: GSKLAMLFPT HLEVVLARPH RLVAAAVERW QQVIQLQGFS LQYLDVCL

Best Arabidopsis Sequence Match ( AT4G17160.1 )
(BLAST)

001: MSYAYRFKYI IIGDTGVGKS CLLLKFTDKR FQAVHDLTIG VEFGAKTITI DNKPIKLQIW DTAGQESFRS VTRSYYRGRA GTLLVYDITR RETFNHLASW
101: LEEARQHASE NMTTMLIGNK CDLEDKRTVS TEEGEQFARE HGLIFMEASA KTAHNVEEAF VETAATIYKR IQDGVVDEAN EPGITPGPFG GKDASSSQQR
201: RGCCG

Arabidopsis Description

RABB1ARABB1a [Source:UniProtKB/TrEMBL;Acc:A0A178UXW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.