Factsheet for PGSC0003DMT400079822

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007700.2.1	Tomato	plastid	99.53	99.53
PGSC0003DMT400054721	Potato	cytosol	77.73	99.39
PGSC0003DMT400020113	Potato	cytosol	98.1	98.1
CDY58166	Canola	cytosol	93.84	94.29
Bra021065.1-P	Field mustard	cytosol	93.84	94.29
CDY50126	Canola	cytosol	93.84	94.29
Os02t0586400-01	Rice	plasma membrane	91.94	92.38
Zm00001d025660_P001	Maize	plasma membrane, plastid	91.94	92.38
HORVU6Hr1G051470.1	Barley	cytosol	91.47	91.9
TraesCS6A01G207100.1	Wheat	cytosol	91.47	91.9
TraesCS6D01G188500.1	Wheat	golgi	91.47	91.9
TraesCS6B01G230400.2	Wheat	cytosol	91.47	91.9
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	91.0	91.43
EES05332	Sorghum	cytosol	90.52	90.95
TraesCS2A01G331600.1	Wheat	cytosol	90.52	90.95
TraesCS2B01G350600.1	Wheat	cytosol	90.52	90.95
TraesCS2D01G331300.1	Wheat	golgi, plastid	90.52	90.95
PGSC0003DMT400032908	Potato	cytosol	87.2	87.2
Os04t0470100-01	Rice	plasma membrane	87.2	87.2
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	90.05	84.07
AT4G17160.1	Thale cress	cytosol	79.62	81.95
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	52.61	79.86
Zm00001d050915_P004	Maize	cytosol	85.78	72.98
PGSC0003DMT400041326	Potato	cytosol	46.92	48.77
PGSC0003DMT400067463	Potato	cytosol	46.45	48.28
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.5	47.29
PGSC0003DMT400064019	Potato	cytosol, extracellular	44.08	46.04
PGSC0003DMT400040138	Potato	cytosol	43.13	42.13
PGSC0003DMT400071317	Potato	cytosol	42.65	41.67
PGSC0003DMT400022823	Potato	cytosol	42.65	41.67
PGSC0003DMT400008917	Potato	cytosol	42.65	41.67
PGSC0003DMT400049296	Potato	cytosol	42.18	41.2

Protein Annotations

EntrezGene:102600913	MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1D2H8	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400031083	PGSC:PGSC0003DMG400031083	EnsemblPlants:PGSC0003DMT400079822	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002956A91	RefSeq:XP_006366756.1
SEG:seg	:	:	:	:	:

Description

Small GTPase Rab2 [Source:PGSC_GENE;Acc:PGSC0003DMG400031083]

Coordinates

chr7:+:51445691..51449943

Molecular Weight (calculated)

23184.6 Da

IEP (calculated)

7.446

GRAVY (calculated)

-0.224

Length

211 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE NGLIFMEASA KTAQNVEEAF IRTASTIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GAASQGGGCC T

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.