CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G188500.1	Wheat	golgi	98.1	98.1
TraesCS6B01G230400.2	Wheat	cytosol	98.1	98.1
HORVU6Hr1G051470.1	Barley	cytosol	98.1	98.1
TraesCS6A01G207100.1	Wheat	cytosol	97.62	97.62
Os02t0586400-01	Rice	plasma membrane	97.14	97.14
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	93.33	93.33
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	99.05	92.04
Solyc10g007700.2.1	Tomato	plastid	91.43	91.0
Solyc12g011130.1.1	Tomato	cytosol	90.95	90.52
PGSC0003DMT400079822	Potato	cytosol	90.95	90.52
PGSC0003DMT400020113	Potato	cytosol	90.95	90.52
Bra021065.1-P	Field mustard	cytosol	90.48	90.48
CDY50126	Canola	cytosol	90.48	90.48
CDY58166	Canola	cytosol	90.48	90.48
AT4G17160.1	Thale cress	cytosol	78.57	80.49
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	51.9	78.42
Zm00001d050915_P004	Maize	cytosol	89.52	75.81
EES03124	Sorghum	cytosol	47.14	48.77
EES07529	Sorghum	cytosol	44.29	45.81
EES18842	Sorghum	cytosol	42.86	43.9
EES10859	Sorghum	cytosol	42.86	43.48
EES19652	Sorghum	cytosol	41.9	40.93
EER93195	Sorghum	cytosol	41.43	40.65
EER98157	Sorghum	cytosol	40.48	39.35
OQU88745	Sorghum	cytosol	41.43	38.5

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EntrezGene:8055424	UniProt:C5XWD1	EnsemblPlants:EES05332	ProteinID:EES05332
ProteinID:EES05332.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030100
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3004G196300	SUPFAM:SSF52540
unigene:Sbi.12210	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A851D4	RefSeq:XP_002452356.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:54744260..54747982

Molecular Weight (calculated)

23071.4 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.205

Length

210 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTVMLIGNK CDLSHRRAVS YEEGEQFAKE HGLVFMEASA KTAQNVEEAF IKTAGTIYKK IQDGIFDVSN ESNGIKVGYV VPNSSGGGAG
201: SSSQAGGCCS

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.