Factsheet for Bra021065.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58166	Canola	cytosol	100.0	100.0
CDY50126	Canola	cytosol	100.0	100.0
Bra026231.1-P	Field mustard	cytosol	98.1	97.63
Solyc10g007700.2.1	Tomato	plastid	94.76	94.31
PGSC0003DMT400079822	Potato	cytosol	94.29	93.84
PGSC0003DMT400020113	Potato	cytosol	93.81	93.36
Solyc12g011130.1.1	Tomato	cytosol	93.81	93.36
Os02t0586400-01	Rice	plasma membrane	91.9	91.9
Zm00001d025660_P001	Maize	plasma membrane, plastid	91.43	91.43
TraesCS6D01G188500.1	Wheat	golgi	91.43	91.43
TraesCS6B01G230400.2	Wheat	cytosol	91.43	91.43
TraesCS6A01G207100.1	Wheat	cytosol	91.43	91.43
HORVU6Hr1G051470.1	Barley	cytosol	91.43	91.43
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	90.48	90.48
EES05332	Sorghum	cytosol	90.48	90.48
TraesCS2A01G331600.1	Wheat	cytosol	89.52	89.52
TraesCS2B01G350600.1	Wheat	cytosol	89.52	89.52
TraesCS2D01G331300.1	Wheat	golgi, plastid	89.52	89.52
Os04t0470100-01	Rice	plasma membrane	87.14	86.73
Bra017733.1-P	Field mustard	cytosol	85.71	85.31
Bra011645.1-P	Field mustard	cytosol	85.24	84.83
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	90.0	83.63
AT4G17160.1	Thale cress	cytosol	80.0	81.95
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	51.9	78.42
Zm00001d050915_P004	Maize	cytosol	85.71	72.58
Bra001418.1-P	Field mustard	cytosol, extracellular	46.19	47.09
Bra022113.1-P	Field mustard	cytosol	44.76	46.53
Bra017497.1-P	Field mustard	cytosol	44.76	46.53
Bra038676.1-P	Field mustard	vacuole	45.24	46.12
Bra024956.1-P	Field mustard	cytosol	44.29	46.04
Bra012658.1-P	Field mustard	cytosol	44.29	46.04
Bra019475.1-P	Field mustard	cytosol	43.33	42.13
Bra002527.1-P	Field mustard	cytosol	43.33	42.13
Bra006690.1-P	Field mustard	cytosol	42.86	41.67
Bra020282.1-P	Field mustard	cytosol	41.9	40.74
Bra005767.1-P	Field mustard	cytosol	40.95	39.63
Bra033830.1-P	Field mustard	cytosol	35.71	38.86
Bra029803.1-P	Field mustard	cytosol	40.48	37.61
Bra040162.1-P	Field mustard	cytosol	43.81	33.58
Bra003149.1-P	Field mustard	cytosol	41.9	32.71
Bra038265.1-P	Field mustard	cytosol	41.9	23.4

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra021065	EnsemblPlants:Bra021065.1	EnsemblPlants:Bra021065.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4DX19	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002546EE0	SEG:seg	:

Description

AT4G17170 (E=2e-104) AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase

Coordinates

chrA08:-:10105714..10106862

Molecular Weight (calculated)

23099.5 Da

IEP (calculated)

6.921

GRAVY (calculated)

-0.237

Length

210 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPLKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLSSRRAVT TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IEDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTPQGGCCG

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.