Factsheet for Solyc10g007700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079822	Potato	cytosol	99.53	99.53
Solyc12g011130.1.1	Tomato	cytosol	98.58	98.58
Bra021065.1-P	Field mustard	cytosol	94.31	94.76
CDY50126	Canola	cytosol	94.31	94.76
CDY58166	Canola	cytosol	94.31	94.76
Solyc07g056150.2.1	Tomato	cytosol, nucleus	94.31	93.87
Os02t0586400-01	Rice	plasma membrane	92.42	92.86
Zm00001d025660_P001	Maize	plasma membrane, plastid	92.42	92.86
HORVU6Hr1G051470.1	Barley	cytosol	91.94	92.38
TraesCS6D01G188500.1	Wheat	golgi	91.94	92.38
TraesCS6B01G230400.2	Wheat	cytosol	91.94	92.38
TraesCS6A01G207100.1	Wheat	cytosol	91.94	92.38
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	91.47	91.9
EES05332	Sorghum	cytosol	91.0	91.43
TraesCS2A01G331600.1	Wheat	cytosol	91.0	91.43
TraesCS2B01G350600.1	Wheat	cytosol	91.0	91.43
TraesCS2D01G331300.1	Wheat	golgi, plastid	91.0	91.43
Os04t0470100-01	Rice	plasma membrane	87.68	87.68
Solyc02g093530.2.1	Tomato	plastid	86.73	86.73
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	90.52	84.51
AT4G17160.1	Thale cress	cytosol	79.62	81.95
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	53.08	80.58
Zm00001d050915_P004	Maize	cytosol	86.26	73.39
Solyc06g060210.1.1	Tomato	cytosol	55.92	58.13
Solyc05g052070.2.1	Tomato	unclear	46.92	48.77
Solyc08g078070.2.1	Tomato	nucleus	46.45	48.28
Solyc01g090170.2.1	Tomato	unclear	45.97	47.78
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	45.5	47.29
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	44.08	46.04
Solyc06g005350.2.1	Tomato	cytosol	31.28	45.83
Solyc09g010370.2.1	Tomato	extracellular, plastid	42.65	41.67
Solyc04g011360.2.1	Tomato	plastid	42.65	41.67
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	42.18	41.2
Solyc10g086350.1.1	Tomato	cytosol, nucleus	41.71	40.74

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0030100	UniProt:K4CXU9	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc10g007700.2	EnsemblPlants:Solyc10g007700.2.1	TIGRFAMs:TIGR00231
UniParc:UPI000276B3C9	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:1953681..1958548

Molecular Weight (calculated)

23156.6 Da

IEP (calculated)

7.446

GRAVY (calculated)

-0.221

Length

211 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE NGLIFMEASA KTAQNVEEAF IKTASTIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GAASQGGGCC T

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.