Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 4
- cytosol 3
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
29145071
|
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc03g121460.1.1 | |
Solyc06g050570.1.1 | |
Solyc09g013110.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G11730.1 | Solyc06g050570.1.1 | AT2G40380.1 | 21798944 |
AT3G11730.1 | Solyc03g121460.1.1 | AT3G13710.1 | 21798944 |
AT3G11730.1 | Solyc09g013110.2.1 | AT3G54120.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400064019 | Potato | cytosol, extracellular | 99.5 | 99.5 |
VIT_12s0035g01150.t01 | Wine grape | vacuole | 91.58 | 91.58 |
KRH06045 | Soybean | cytosol | 87.13 | 87.56 |
KRH26285 | Soybean | endoplasmic reticulum | 86.63 | 87.06 |
AT3G11730.1 | Thale cress | cytosol | 86.14 | 84.88 |
CDX73855 | Canola | cytosol | 85.64 | 83.98 |
CDY56593 | Canola | cytosol | 85.64 | 83.98 |
Bra001418.1-P | Field mustard | cytosol, extracellular | 85.15 | 83.5 |
Zm00001d003588_P002 | Maize | cytosol, extracellular | 60.89 | 82.55 |
Bra038676.1-P | Field mustard | vacuole | 83.66 | 82.04 |
CDY47919 | Canola | vacuole | 83.66 | 82.04 |
GSMUA_Achr10P... | Banana | cytosol | 81.68 | 81.68 |
Zm00001d035741_P002 | Maize | cytosol | 78.71 | 77.56 |
EES18842 | Sorghum | cytosol | 78.22 | 77.07 |
TraesCS1B01G019100.2 | Wheat | golgi | 77.72 | 76.59 |
TraesCS1A01G015300.1 | Wheat | cytosol, extracellular | 77.23 | 76.1 |
TraesCS1D01G013200.1 | Wheat | cytosol, extracellular | 76.73 | 75.98 |
Solyc05g052070.2.1 | Tomato | unclear | 76.24 | 75.86 |
Solyc08g078070.2.1 | Tomato | nucleus | 75.74 | 75.37 |
EES10859 | Sorghum | cytosol | 76.73 | 74.88 |
TraesCS2B01G327900.1 | Wheat | cytosol | 76.24 | 74.76 |
Solyc05g053940.2.1 | Tomato | nucleus, plastid, unclear | 74.75 | 74.38 |
Solyc01g090170.2.1 | Tomato | unclear | 73.27 | 72.91 |
TraesCS2A01G311000.3 | Wheat | cytosol | 76.24 | 72.3 |
TraesCS2D01G309200.2 | Wheat | cytosol | 75.74 | 71.83 |
HORVU1Hr1G001910.9 | Barley | endoplasmic reticulum | 76.73 | 68.89 |
Zm00001d005215_P001 | Maize | cytosol | 50.49 | 67.11 |
GSMUA_Achr6P17450_001 | Banana | cytosol | 83.17 | 66.67 |
Solyc06g005350.2.1 | Tomato | cytosol | 42.57 | 59.72 |
Zm00001d003789_P002 | Maize | extracellular, plasma membrane | 73.27 | 56.06 |
Solyc11g073050.1.1 | Tomato | endoplasmic reticulum | 58.42 | 54.63 |
Solyc09g010370.2.1 | Tomato | extracellular, plastid | 56.93 | 53.24 |
Solyc10g086350.1.1 | Tomato | cytosol, nucleus | 56.93 | 53.24 |
Solyc04g011360.2.1 | Tomato | plastid | 56.93 | 53.24 |
Solyc02g093530.2.1 | Tomato | plastid | 46.53 | 44.55 |
Solyc10g007700.2.1 | Tomato | plastid | 46.04 | 44.08 |
Solyc12g011130.1.1 | Tomato | cytosol | 46.04 | 44.08 |
Solyc07g056150.2.1 | Tomato | cytosol, nucleus | 43.07 | 41.04 |
Solyc06g060210.1.1 | Tomato | cytosol | 40.1 | 39.9 |
Protein Annotations
MapMan:22.8.1.4 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF845 | UniProt:Q41339 | SMART:SM00173 | SMART:SM00174 |
SMART:SM00175 | SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
EnsemblPlantsGene:Solyc01g103370.2 | EnsemblPlants:Solyc01g103370.2.1 | TIGRFAMs:TIGR00231 | EMBL:U38465 | UniParc:UPI00000A3314 | : |
Description
Ras-related protein RABD1 [Source:Projected from Arabidopsis thaliana (AT3G11730) UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
Coordinates
chr1:+:91989852..91994839
Molecular Weight (calculated)
22504.9 Da
IEP (calculated)
5.101
GRAVY (calculated)
-0.277
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DSYVDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TEMESFNNVK
101: QWLNEIDRYA NESVCKLLVG NKCDLVENKV VDTQMGKALA DELGIPFLET SAKDSINVEQ AFLTMAGEIK KKMGNQPAGA KRTGSTVQIK GQPIEQKGNC
201: CG
101: QWLNEIDRYA NESVCKLLVG NKCDLVENKV VDTQMGKALA DELGIPFLET SAKDSINVEQ AFLTMAGEIK KKMGNQPAGA KRTGSTVQIK GQPIEQKGNC
201: CG
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
Arabidopsis Description
RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.