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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 3
  • plasma membrane 3
  • golgi 4
  • cytosol 3
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:secretory
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:cytosol
endoplasmic reticulum: 29145071
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400064019 Potato cytosol, extracellular 99.5 99.5
VIT_12s0035g01150.t01 Wine grape vacuole 91.58 91.58
KRH06045 Soybean cytosol 87.13 87.56
KRH26285 Soybean endoplasmic reticulum 86.63 87.06
AT3G11730.1 Thale cress cytosol 86.14 84.88
CDX73855 Canola cytosol 85.64 83.98
CDY56593 Canola cytosol 85.64 83.98
Bra001418.1-P Field mustard cytosol, extracellular 85.15 83.5
Zm00001d003588_P002 Maize cytosol, extracellular 60.89 82.55
Bra038676.1-P Field mustard vacuole 83.66 82.04
CDY47919 Canola vacuole 83.66 82.04
GSMUA_Achr10P... Banana cytosol 81.68 81.68
Zm00001d035741_P002 Maize cytosol 78.71 77.56
EES18842 Sorghum cytosol 78.22 77.07
TraesCS1B01G019100.2 Wheat golgi 77.72 76.59
TraesCS1A01G015300.1 Wheat cytosol, extracellular 77.23 76.1
TraesCS1D01G013200.1 Wheat cytosol, extracellular 76.73 75.98
Solyc05g052070.2.1 Tomato unclear 76.24 75.86
Solyc08g078070.2.1 Tomato nucleus 75.74 75.37
EES10859 Sorghum cytosol 76.73 74.88
TraesCS2B01G327900.1 Wheat cytosol 76.24 74.76
Solyc05g053940.2.1 Tomato nucleus, plastid, unclear 74.75 74.38
Solyc01g090170.2.1 Tomato unclear 73.27 72.91
TraesCS2A01G311000.3 Wheat cytosol 76.24 72.3
TraesCS2D01G309200.2 Wheat cytosol 75.74 71.83
HORVU1Hr1G001910.9 Barley endoplasmic reticulum 76.73 68.89
Zm00001d005215_P001 Maize cytosol 50.49 67.11
GSMUA_Achr6P17450_001 Banana cytosol 83.17 66.67
Solyc06g005350.2.1 Tomato cytosol 42.57 59.72
Zm00001d003789_P002 Maize extracellular, plasma membrane 73.27 56.06
Solyc11g073050.1.1 Tomato endoplasmic reticulum 58.42 54.63
Solyc09g010370.2.1 Tomato extracellular, plastid 56.93 53.24
Solyc10g086350.1.1 Tomato cytosol, nucleus 56.93 53.24
Solyc04g011360.2.1 Tomato plastid 56.93 53.24
Solyc02g093530.2.1 Tomato plastid 46.53 44.55
Solyc10g007700.2.1 Tomato plastid 46.04 44.08
Solyc12g011130.1.1 Tomato cytosol 46.04 44.08
Solyc07g056150.2.1 Tomato cytosol, nucleus 43.07 41.04
Solyc06g060210.1.1 Tomato cytosol 40.1 39.9
Protein Annotations
MapMan:22.8.1.4Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0016787InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449
PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF845UniProt:Q41339SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase
EnsemblPlantsGene:Solyc01g103370.2EnsemblPlants:Solyc01g103370.2.1TIGRFAMs:TIGR00231EMBL:U38465UniParc:UPI00000A3314:
Description
Ras-related protein RABD1 [Source:Projected from Arabidopsis thaliana (AT3G11730) UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
Coordinates
chr1:+:91989852..91994839
Molecular Weight (calculated)
22504.9 Da
IEP (calculated)
5.101
GRAVY (calculated)
-0.277
Length
202 amino acids
Sequence
(BLAST)
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DSYVDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TEMESFNNVK
101: QWLNEIDRYA NESVCKLLVG NKCDLVENKV VDTQMGKALA DELGIPFLET SAKDSINVEQ AFLTMAGEIK KKMGNQPAGA KRTGSTVQIK GQPIEQKGNC
201: CG
Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
Arabidopsis Description
RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.