Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 3
- golgi 4
- cytosol 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g01720.t01 | |
| VIT_09s0002g02400.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11730.1 | VIT_09s0002g02400.t01 | AT3G13710.1 | 21798944 |
| AT3G11730.1 | VIT_08s0007g01720.t01 | AT3G54120.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064019 | Potato | cytosol, extracellular | 91.58 | 91.58 |
| Solyc01g103370.2.1 | Tomato | endoplasmic reticulum | 91.58 | 91.58 |
| KRH06045 | Soybean | cytosol | 90.59 | 91.04 |
| KRH26285 | Soybean | endoplasmic reticulum | 89.6 | 90.05 |
| CDX73855 | Canola | cytosol | 88.12 | 86.41 |
| CDY56593 | Canola | cytosol | 88.12 | 86.41 |
| Bra001418.1-P | Field mustard | cytosol, extracellular | 87.62 | 85.92 |
| AT3G11730.1 | Thale cress | cytosol | 87.13 | 85.85 |
| GSMUA_Achr10P... | Banana | cytosol | 85.64 | 85.64 |
| Bra038676.1-P | Field mustard | vacuole | 87.13 | 85.44 |
| CDY47919 | Canola | vacuole | 87.13 | 85.44 |
| Zm00001d003588_P002 | Maize | cytosol, extracellular | 61.39 | 83.22 |
| Zm00001d035741_P002 | Maize | cytosol | 81.19 | 80.0 |
| TraesCS1B01G019100.2 | Wheat | golgi | 81.19 | 80.0 |
| TraesCS1A01G015300.1 | Wheat | cytosol, extracellular | 81.19 | 80.0 |
| TraesCS1D01G013200.1 | Wheat | cytosol, extracellular | 80.69 | 79.9 |
| EES18842 | Sorghum | cytosol | 80.69 | 79.51 |
| VIT_00s1372g00020.t01 | Wine grape | cytosol | 76.24 | 77.78 |
| VIT_16s0013g00520.t01 | Wine grape | extracellular | 77.23 | 76.85 |
| TraesCS2B01G327900.1 | Wheat | cytosol | 78.22 | 76.7 |
| EES10859 | Sorghum | cytosol | 78.22 | 76.33 |
| TraesCS2A01G311000.3 | Wheat | cytosol | 78.22 | 74.18 |
| TraesCS2D01G309200.2 | Wheat | cytosol | 77.72 | 73.71 |
| HORVU1Hr1G001910.9 | Barley | endoplasmic reticulum | 80.69 | 72.44 |
| GSMUA_Achr6P17450_001 | Banana | cytosol | 85.64 | 68.65 |
| Zm00001d005215_P001 | Maize | cytosol | 50.99 | 67.76 |
| Zm00001d003789_P002 | Maize | extracellular, plasma membrane | 74.75 | 57.2 |
| VIT_15s0021g01410.t01 | Wine grape | cytosol | 56.44 | 55.61 |
| VIT_13s0019g00520.t01 | Wine grape | extracellular | 58.91 | 55.09 |
| VIT_00s0878g00030.t01 | Wine grape | cytosol | 27.72 | 54.9 |
| VIT_06s0004g04200.t01 | Wine grape | cytosol | 58.42 | 54.63 |
| VIT_08s0007g04750.t01 | Wine grape | cytosol | 58.42 | 54.63 |
| VIT_08s0040g02490.t01 | Wine grape | cytosol | 56.93 | 53.24 |
| VIT_14s0066g00180.t01 | Wine grape | cytosol | 46.53 | 44.98 |
| VIT_12s0057g01470.t01 | Wine grape | extracellular | 46.53 | 44.55 |
| VIT_00s1506g00010.t01 | Wine grape | cytosol | 28.71 | 38.93 |
| VIT_00s0455g00010.t01 | Wine grape | cytosol | 16.83 | 25.56 |
Protein Annotations
| EntrezGene:100254021 | wikigene:100254021 | MapMan:22.8.1.4 | Gene3D:3.40.50.300 | ProteinID:CBI29687 | ProteinID:CBI29687.3 |
| UniProt:D7TGR5 | EMBL:FN595990 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EntrezGene:LOC100254021 | wikigene:LOC100254021 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF827 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | TIGR:TC52491 | TIGR:TC59047 | TIGRFAMs:TIGR00231 | UniParc:UPI00015CC13F | ArrayExpress:VIT_12s0035g01150 |
| EnsemblPlantsGene:VIT_12s0035g01150 | EnsemblPlants:VIT_12s0035g01150.t01 | RefSeq:XP_002264623 | RefSeq:XP_002264623.1 | : | : |
Description
No Description!
Coordinates
chr12:-:20955727..20959744
Molecular Weight (calculated)
22559.8 Da
IEP (calculated)
4.755
GRAVY (calculated)
-0.262
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDYDYLFK LLLIGDSSVG KSCLLLRFAD DSYVDSYIST IGVDFKIRTV ELDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TEMESFNNVK
101: QWLNEIDRYA NDSVCKLLVG NKCDLVENKV VDTETAKAFA DELGIPFLET SAKDSINVEQ AFLTMAGEIK KKMGNQPNAT ARSSSTVQMK GQPIQQNSNC
201: CG
101: QWLNEIDRYA NDSVCKLLVG NKCDLVENKV VDTETAKAFA DELGIPFLET SAKDSINVEQ AFLTMAGEIK KKMGNQPNAT ARSSSTVQMK GQPIQQNSNC
201: CG
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
Arabidopsis Description
RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.