Factsheet for HORVU1Hr1G001910.9

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
TargetP:	secretory
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	HORVU1Hr1G028520.1	AT3G13710.1	21798944
AT3G11730.1	HORVU3Hr1G018940.2	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G019100.2	Wheat	golgi	88.0	96.59
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	87.11	96.08
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	87.11	95.61
EES18842	Sorghum	cytosol	78.22	85.85
Zm00001d035741_P002	Maize	cytosol	77.78	85.37
VIT_12s0035g01150.t01	Wine grape	vacuole	72.44	80.69
KRH06045	Soybean	cytosol	71.56	80.1
KRH26285	Soybean	endoplasmic reticulum	70.67	79.1
GSMUA_Achr10P...	Banana	cytosol	69.33	77.23
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	68.89	76.73
PGSC0003DMT400064019	Potato	cytosol, extracellular	68.44	76.24
CDY47919	Canola	vacuole	69.78	76.21
Bra038676.1-P	Field mustard	vacuole	69.78	76.21
CDY56593	Canola	cytosol	68.44	74.76
CDX73855	Canola	cytosol	68.44	74.76
AT3G11730.1	Thale cress	cytosol	68.0	74.63
Bra001418.1-P	Field mustard	cytosol, extracellular	68.0	74.27
HORVU3Hr1G048090.1	Barley	plasma membrane	66.22	73.4
HORVU3Hr1G010800.8	Barley	cytosol	51.56	71.17
GSMUA_Achr6P17450_001	Banana	cytosol	70.67	63.1
HORVU3Hr1G010780.1	Barley	plasma membrane	64.89	52.33
HORVU1Hr1G072070.1	Barley	cytosol	48.0	48.0
HORVU6Hr1G051470.1	Barley	cytosol	39.11	41.9
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	46.22	40.15
HORVU5Hr1G071600.3	Barley	cytosol	37.33	39.07
HORVU3Hr1G086830.7	Barley	cytosol	41.78	35.47

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	UniProt:A0A287EG17	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810
GO:GO:0006888	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	GO:GO:0030742	GO:GO:0032588
GO:GO:0080115	EnsemblPlantsGene:HORVU1Hr1G001910	EnsemblPlants:HORVU1Hr1G001910.9	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000B47A45D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:4161243..4164716

Molecular Weight (calculated)

25084.9 Da

IEP (calculated)

6.266

GRAVY (calculated)

-0.122

Length

225 amino acids

Sequence
(BLAST)

001: RVVSSSPADL SFFLPRLISR LSVCCSDYLF KLLLIGDSSV GKSCLLLRFA QDDAYVDTYI STIGVDFKIR TVELDGKSVK LQIWDTAGQE RFRTITSSYY
101: RGAHGIIIVY DVTDRESFNN VKQWLSEIDR YASDSVCKLL VGNKCDLVDS KVVDTEEAKA FAESLGMNFL ETSAKESINV ETAFLTMSSE IKNKMASQPA
201: AERKSTVHVH MKGQPIQQQQ SSCCS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.