Factsheet for PGSC0003DMT400064019

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006409
PGSC0003DMT400052428
PGSC0003DMT400061546

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	PGSC0003DMT400061546	AT2G40380.1	21798944
AT3G11730.1	PGSC0003DMT400006409	AT3G13710.1	21798944
AT3G11730.1	PGSC0003DMT400052428	AT3G54120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	99.5	99.5
VIT_12s0035g01150.t01	Wine grape	vacuole	91.58	91.58
KRH06045	Soybean	cytosol	87.62	88.06
KRH26285	Soybean	endoplasmic reticulum	87.13	87.56
AT3G11730.1	Thale cress	cytosol	86.14	84.88
CDX73855	Canola	cytosol	85.64	83.98
CDY56593	Canola	cytosol	85.64	83.98
Bra001418.1-P	Field mustard	cytosol, extracellular	85.15	83.5
Zm00001d003588_P002	Maize	cytosol, extracellular	60.89	82.55
Bra038676.1-P	Field mustard	vacuole	83.66	82.04
CDY47919	Canola	vacuole	83.66	82.04
GSMUA_Achr10P...	Banana	cytosol	81.68	81.68
Zm00001d035741_P002	Maize	cytosol	79.21	78.05
EES18842	Sorghum	cytosol	78.71	77.56
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	77.72	76.59
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	77.23	76.47
TraesCS1B01G019100.2	Wheat	golgi	77.23	76.1
PGSC0003DMT400041326	Potato	cytosol	76.24	75.86
TraesCS2B01G327900.1	Wheat	cytosol	76.24	74.76
EES10859	Sorghum	cytosol	76.24	74.4
PGSC0003DMT400067463	Potato	cytosol	74.75	74.38
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.26	73.89
TraesCS2A01G311000.3	Wheat	cytosol	76.24	72.3
TraesCS2D01G309200.2	Wheat	cytosol	75.74	71.83
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	76.24	68.44
GSMUA_Achr6P17450_001	Banana	cytosol	83.66	67.06
Zm00001d005215_P001	Maize	cytosol	50.0	66.45
Zm00001d003789_P002	Maize	extracellular, plasma membrane	72.77	55.68
PGSC0003DMT400040138	Potato	cytosol	58.91	55.09
PGSC0003DMT400008917	Potato	cytosol	57.92	54.17
PGSC0003DMT400071317	Potato	cytosol	57.43	53.7
PGSC0003DMT400049296	Potato	cytosol	56.93	53.24
PGSC0003DMT400022823	Potato	cytosol	56.93	53.24
PGSC0003DMT400079822	Potato	cytosol	46.04	44.08
PGSC0003DMT400032908	Potato	cytosol	46.04	44.08
PGSC0003DMT400020113	Potato	cytosol	46.04	44.08
PGSC0003DMT400054721	Potato	cytosol	33.17	40.61

Protein Annotations

EntrezGene:102584742	MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1CBL3	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG403024882	PGSC:PGSC0003DMG403024882	EnsemblPlants:PGSC0003DMT400064019	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF845	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296B2FA
RefSeq:XP_006349308.1	:	:	:	:	:

Description

Small GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG403024882]

Coordinates

chr1:+:80082706..80087472

Molecular Weight (calculated)

22534.9 Da

IEP (calculated)

5.101

GRAVY (calculated)

-0.289

Length

202 amino acids

Sequence
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DSYVDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TEMESFNNVK
101: QWLNEIDRYA NESVCKLLVG NKCDLVENKV VDTQMGKALA DELGIPFLET SAKDSINVEQ AFLTMAGEIK KKMGNQPTGA KRTGSTVQIK GQPIEQKGNC
201: CG

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.