Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 4
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g011130.1.1 | Tomato | cytosol | 100.0 | 100.0 |
| PGSC0003DMT400054721 | Potato | cytosol | 76.78 | 98.18 |
| PGSC0003DMT400079822 | Potato | cytosol | 98.1 | 98.1 |
| Bra021065.1-P | Field mustard | cytosol | 93.36 | 93.81 |
| CDY50126 | Canola | cytosol | 93.36 | 93.81 |
| CDY58166 | Canola | cytosol | 93.36 | 93.81 |
| Zm00001d025660_P001 | Maize | plasma membrane, plastid | 91.94 | 92.38 |
| EES10970 | Sorghum | cytoskeleton, cytosol, endoplasmic reticulum | 91.47 | 91.9 |
| HORVU6Hr1G051470.1 | Barley | cytosol | 91.47 | 91.9 |
| Os02t0586400-01 | Rice | plasma membrane | 91.47 | 91.9 |
| TraesCS6D01G188500.1 | Wheat | golgi | 91.47 | 91.9 |
| TraesCS6B01G230400.2 | Wheat | cytosol | 91.47 | 91.9 |
| TraesCS6A01G207100.1 | Wheat | cytosol | 91.47 | 91.9 |
| TraesCS2A01G331600.1 | Wheat | cytosol | 90.52 | 90.95 |
| EES05332 | Sorghum | cytosol | 90.52 | 90.95 |
| TraesCS2D01G331300.1 | Wheat | golgi, plastid | 90.52 | 90.95 |
| TraesCS2B01G350600.1 | Wheat | cytosol | 90.52 | 90.95 |
| Os04t0470100-01 | Rice | plasma membrane | 87.2 | 87.2 |
| PGSC0003DMT400032908 | Potato | cytosol | 86.73 | 86.73 |
| Zm00001d017026_P003 | Maize | cytosol, endoplasmic reticulum, nucleus | 90.05 | 84.07 |
| AT4G17160.1 | Thale cress | cytosol | 78.67 | 80.98 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, vacuole | 52.13 | 79.14 |
| Zm00001d050915_P004 | Maize | cytosol | 85.78 | 72.98 |
| PGSC0003DMT400041326 | Potato | cytosol | 46.92 | 48.77 |
| PGSC0003DMT400067463 | Potato | cytosol | 46.45 | 48.28 |
| PGSC0003DMT400034028 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 45.5 | 47.29 |
| PGSC0003DMT400064019 | Potato | cytosol, extracellular | 44.08 | 46.04 |
| PGSC0003DMT400040138 | Potato | cytosol | 43.6 | 42.59 |
| PGSC0003DMT400022823 | Potato | cytosol | 43.13 | 42.13 |
| PGSC0003DMT400008917 | Potato | cytosol | 43.13 | 42.13 |
| PGSC0003DMT400071317 | Potato | cytosol | 42.65 | 41.67 |
| PGSC0003DMT400049296 | Potato | cytosol | 42.65 | 41.67 |
Protein Annotations
| EntrezGene:102592580 | EntrezGene:102600740 | MapMan:22.8.1.2 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:M1AD06 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | EnsemblPlantsGene:PGSC0003DMG400007791 | PGSC:PGSC0003DMG400007791 | EnsemblPlants:PGSC0003DMT400020113 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF597 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000276A18A |
| RefSeq:XP_006350009.1 | RefSeq:XP_006360009.1 | SEG:seg | : | : | : |
Description
Small GTPase Rab2 [Source:PGSC_GENE;Acc:PGSC0003DMG400007791]
Coordinates
chr12:+:1221418..1225573
Molecular Weight (calculated)
23142.5 Da
IEP (calculated)
7.446
GRAVY (calculated)
-0.212
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMSIMLIGNK CDLAHRRAVS TEEGEQFAKE NGLIFMEASA KTAQNVEEAF IKTASTIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GAASQGGACC S
101: LEDARQHANA NMSIMLIGNK CDLAHRRAVS TEEGEQFAKE NGLIFMEASA KTAQNVEEAF IKTASTIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GAASQGGACC S
001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G
Arabidopsis Description
RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.