CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021065.1-P	Field mustard	cytosol	100.0	100.0
CDY50126	Canola	cytosol	100.0	100.0
CDY09641	Canola	cytosol	98.57	98.1
CDY35596	Canola	cytosol	98.1	97.63
CDY42961	Canola	cytosol	98.1	97.63
Solyc10g007700.2.1	Tomato	plastid	94.76	94.31
PGSC0003DMT400079822	Potato	cytosol	94.29	93.84
PGSC0003DMT400020113	Potato	cytosol	93.81	93.36
Solyc12g011130.1.1	Tomato	cytosol	93.81	93.36
Os02t0586400-01	Rice	plasma membrane	91.9	91.9
Zm00001d025660_P001	Maize	plasma membrane, plastid	91.43	91.43
HORVU6Hr1G051470.1	Barley	cytosol	91.43	91.43
TraesCS6A01G207100.1	Wheat	cytosol	91.43	91.43
TraesCS6B01G230400.2	Wheat	cytosol	91.43	91.43
TraesCS6D01G188500.1	Wheat	golgi	91.43	91.43
EES05332	Sorghum	cytosol	90.48	90.48
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	90.48	90.48
TraesCS2B01G350600.1	Wheat	cytosol	89.52	89.52
TraesCS2A01G331600.1	Wheat	cytosol	89.52	89.52
TraesCS2D01G331300.1	Wheat	golgi, plastid	89.52	89.52
Os04t0470100-01	Rice	plasma membrane	87.14	86.73
CDY47039	Canola	plasma membrane	85.71	85.31
CDX75535	Canola	cytosol	85.24	84.83
CDX69177	Canola	cytosol	85.24	84.83
CDX72559	Canola	cytosol	85.24	84.83
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	90.0	83.63
AT4G17160.1	Thale cress	cytosol	80.0	81.95
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	51.9	78.42
Zm00001d050915_P004	Maize	cytosol	85.71	72.58
CDY72056	Canola	cytosol	29.52	49.6
CDX73855	Canola	cytosol	46.19	47.09
CDY56593	Canola	cytosol	46.19	47.09
CDY40564	Canola	cytosol	44.76	46.53
CDX76566	Canola	cytosol	44.76	46.53
CDY43436	Canola	cytosol	44.76	46.53
CDY65880	Canola	cytosol	44.76	46.53
CDY28967	Canola	cytosol	44.76	46.53
CDY67887	Canola	cytosol	44.76	46.31
CDY47919	Canola	vacuole	45.24	46.12
CDY33521	Canola	cytosol	44.29	46.04
CDX77748	Canola	cytosol	44.29	46.04
CDX90468	Canola	cytosol	44.29	46.04
CDY52557	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	43.81	43.19
CDY31592	Canola	cytosol	43.33	42.13
CDY38404	Canola	endoplasmic reticulum	43.81	42.01
CDX77855	Canola	cytosol	42.86	41.67
CDX68365	Canola	cytosol	42.86	41.67
CDY71506	Canola	cytosol	42.86	41.67
CDY30926	Canola	cytosol	42.86	41.67
CDX80224	Canola	cytosol	41.9	41.31
CDY09249	Canola	cytosol	42.38	41.2
CDX88726	Canola	cytosol	42.38	41.2
CDX88725	Canola	cytosol	42.38	41.2
CDX85225	Canola	cytosol	30.95	41.14
CDX86045	Canola	cytosol	41.9	40.74
CDY38055	Canola	cytosol	45.71	40.51
CDY11256	Canola	cytosol	40.95	39.63
CDY41572	Canola	cytosol	40.95	39.45
CDY54609	Canola	cytosol	40.48	38.99
CDX80871	Canola	cytosol	40.95	38.56
CDY09621	Canola	cytosol	43.33	37.45
CDY34032	Canola	cytosol	24.29	34.69
CDY07577	Canola	cytosol	41.9	32.96
CDY70243	Canola	cytosol	23.81	32.89
CDY52746	Canola	cytosol	41.9	32.71
CDX94925	Canola	cytosol	24.29	31.1
CDX99131	Canola	cytosol	41.9	28.57

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:A0A078IJF6	UniProt:A0A078IJF6	ProteinID:CDY50126.1	EnsemblPlants:CDY58166
ProteinID:CDY58166	ProteinID:CDY58166.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00023182001	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002546EE0	SEG:seg	:	:	:	:

Description

BnaA08g30220DBnaA08g30220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJF6]

Coordinates

chrLK033642:-:13070..14450

Molecular Weight (calculated)

23099.5 Da

IEP (calculated)

6.921

GRAVY (calculated)

-0.237

Length

210 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPLKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLSSRRAVT TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IEDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTPQGGCCG

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.