Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005767.1-P | Field mustard | cytosol | 97.31 | 100.0 |
| CDY11256 | Canola | cytosol | 97.31 | 100.0 |
| AT5G03520.1 | Thale cress | cytosol | 94.62 | 97.69 |
| CDY54609 | Canola | cytosol | 91.93 | 94.04 |
| CDY41572 | Canola | cytosol | 91.93 | 94.04 |
| CDY72056 | Canola | cytosol | 50.67 | 90.4 |
| CDY31592 | Canola | cytosol | 82.96 | 85.65 |
| CDY30926 | Canola | cytosol | 82.51 | 85.19 |
| VIT_08s0007g04750.t01 | Wine grape | cytosol | 82.51 | 85.19 |
| CDY71506 | Canola | cytosol | 82.06 | 84.72 |
| CDX68365 | Canola | cytosol | 82.06 | 84.72 |
| CDX86045 | Canola | cytosol | 81.61 | 84.26 |
| CDX77855 | Canola | cytosol | 81.17 | 83.8 |
| CDX88725 | Canola | cytosol | 81.17 | 83.8 |
| CDX88726 | Canola | cytosol | 81.17 | 83.8 |
| CDX80224 | Canola | cytosol | 78.92 | 82.63 |
| CDY09249 | Canola | cytosol | 78.48 | 81.02 |
| EER98157 | Sorghum | cytosol | 76.23 | 78.7 |
| CDY34032 | Canola | cytosol | 49.78 | 75.51 |
| CDY70243 | Canola | cytosol | 49.33 | 72.37 |
| CDY07577 | Canola | cytosol | 82.06 | 68.54 |
| CDY52746 | Canola | cytosol | 81.61 | 67.66 |
| CDX94925 | Canola | cytosol | 49.33 | 67.07 |
| CDX76566 | Canola | cytosol | 54.26 | 59.9 |
| CDY65880 | Canola | cytosol | 54.26 | 59.9 |
| CDX99131 | Canola | cytosol | 82.06 | 59.42 |
| CDX77748 | Canola | cytosol | 53.81 | 59.41 |
| CDY33521 | Canola | cytosol | 53.81 | 59.41 |
| CDY40564 | Canola | cytosol | 53.36 | 58.91 |
| CDX90468 | Canola | cytosol | 53.36 | 58.91 |
| CDY43436 | Canola | cytosol | 53.36 | 58.91 |
| CDY28967 | Canola | cytosol | 53.36 | 58.91 |
| CDY67887 | Canola | cytosol | 53.36 | 58.62 |
| Os07t0195100-01 | Rice | plasma membrane | 71.3 | 58.24 |
| CDY47919 | Canola | vacuole | 52.47 | 56.8 |
| CDX73855 | Canola | cytosol | 51.57 | 55.83 |
| CDY56593 | Canola | cytosol | 51.57 | 55.83 |
| CDY52557 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 52.91 | 55.4 |
| CDY38404 | Canola | endoplasmic reticulum | 53.36 | 54.34 |
| CDY38055 | Canola | cytosol | 55.16 | 51.9 |
| CDX85225 | Canola | cytosol | 34.53 | 48.73 |
| CDY09621 | Canola | cytosol | 51.57 | 47.33 |
| CDX69177 | Canola | cytosol | 40.36 | 42.65 |
| CDX75535 | Canola | cytosol | 40.36 | 42.65 |
| CDX72559 | Canola | cytosol | 39.91 | 42.18 |
| CDY47039 | Canola | plasma membrane | 39.01 | 41.23 |
| CDY58166 | Canola | cytosol | 38.56 | 40.95 |
| CDY50126 | Canola | cytosol | 38.56 | 40.95 |
| CDY09641 | Canola | cytosol | 38.56 | 40.76 |
| CDY42961 | Canola | cytosol | 38.56 | 40.76 |
| CDY35596 | Canola | cytosol | 38.56 | 40.76 |
Protein Annotations
| MapMan:22.8.1.5 | Gene3D:3.40.50.300 | GO:A0A078CUN4 | EnsemblPlants:CDX80871 | ProteinID:CDX80871 | ProteinID:CDX80871.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00134269001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF646 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EEE950 | SEG:seg |
Description
BnaC03g01250D
Coordinates
chrLK031823:+:563701..565786
Molecular Weight (calculated)
24775.5 Da
IEP (calculated)
8.029
GRAVY (calculated)
-0.215
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGH VFLALIDFKI RTVELDGKRI KLQIWDTAGQ ERFRTITTAY YRGAMGILLV
101: YDVTDESSFN NIRNWMKNIE QHASDNVNKI LVGNKADMDE SKRAIPTAKG QALADEYGIK FFETSAKTNL NVESVFLSIA KDIKQRLTET DTKAEPQGIK
201: ITKQDAASSS STTAEKSACC SYV
101: YDVTDESSFN NIRNWMKNIE QHASDNVNKI LVGNKADMDE SKRAIPTAKG QALADEYGIK FFETSAKTNL NVESVFLSIA KDIKQRLTET DTKAEPQGIK
201: ITKQDAASSS STTAEKSACC SYV
001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWM KNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVENVF MSIAKDIKQR LTETDTKAEP QGIKITKQDT
201: AASSSTAEKS ACCSYV
101: SSFNNIRNWM KNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVENVF MSIAKDIKQR LTETDTKAEP QGIKITKQDT
201: AASSSTAEKS ACCSYV
Arabidopsis Description
RABE1DRAB8C [Source:UniProtKB/TrEMBL;Acc:A0A178UJN5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.