CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90468	Canola	cytosol	80.66	97.03
CDY28967	Canola	cytosol	79.84	96.04
CDY43436	Canola	cytosol	79.84	96.04
CDY40564	Canola	cytosol	79.84	96.04
CDY67887	Canola	cytosol	79.84	95.57
CDY33521	Canola	cytosol	79.01	95.05
CDY65880	Canola	cytosol	79.01	95.05
CDX76566	Canola	cytosol	79.01	95.05
CDX77748	Canola	cytosol	79.01	95.05
AT4G17530.1	Thale cress	cytosol	78.6	94.55
CDX85225	Canola	cytosol	59.67	91.77
CDY52557	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	79.84	91.08
CDY38404	Canola	endoplasmic reticulum	79.84	88.58
CDY47919	Canola	vacuole	61.73	72.82
CDY56593	Canola	cytosol	61.32	72.33
CDX73855	Canola	cytosol	61.32	72.33
CDY38055	Canola	cytosol	67.49	69.2
CDY72056	Canola	cytosol	32.51	63.2
CDY30926	Canola	cytosol	49.79	56.02
CDY71506	Canola	cytosol	49.79	56.02
CDX68365	Canola	cytosol	49.79	56.02
CDX86045	Canola	cytosol	49.38	55.56
CDX77855	Canola	cytosol	49.38	55.56
CDY31592	Canola	cytosol	48.56	54.63
CDX88725	Canola	cytosol	48.56	54.63
CDX88726	Canola	cytosol	48.56	54.63
CDY41572	Canola	cytosol	48.15	53.67
CDY09249	Canola	cytosol	47.33	53.24
CDY11256	Canola	cytosol	47.33	53.0
CDY54609	Canola	cytosol	47.33	52.75
CDX80224	Canola	cytosol	46.09	52.58
CDX80871	Canola	cytosol	47.33	51.57
CDY34032	Canola	cytosol	27.98	46.26
CDY70243	Canola	cytosol	27.98	44.74
CDX72559	Canola	cytosol	38.68	44.55
CDY07577	Canola	cytosol	48.56	44.19
CDY52746	Canola	cytosol	48.56	43.87
CDX75535	Canola	cytosol	37.86	43.6
CDX69177	Canola	cytosol	37.86	43.6
CDY50126	Canola	cytosol	37.45	43.33
CDY58166	Canola	cytosol	37.45	43.33
CDY47039	Canola	plasma membrane	37.45	43.13
CDX94925	Canola	cytosol	28.81	42.68
CDY09641	Canola	cytosol	37.04	42.65
CDY42961	Canola	cytosol	37.04	42.65
CDY35596	Canola	cytosol	37.04	42.65
CDX99131	Canola	cytosol	49.79	39.29

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:A0A078F8G3	UniProt:A0A078F8G3	EnsemblPlants:CDY09621	ProteinID:CDY09621
ProteinID:CDY09621.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00031264001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0004EE20B2	:	:	:	:	:

Description

BnaC07g34400DBnaC07g34400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8G3]

Coordinates

chrLK031998:+:69858..71532

Molecular Weight (calculated)

27208.3 Da

IEP (calculated)

8.576

GRAVY (calculated)

-0.380

Length

243 amino acids

Sequence
(BLAST)

001: MTRQQFDKKK DVFKTRRRHI AIVYVSQIAL LTDERSAESP PLRCYRDYLF KLLLIGDSGV GKSCLLLRFA DDSYLDSYIS TIGVDFKIRT VEQDGKTIKL
101: QIWDTAGQER FRTITSSYYR GAHGIIVTYD VTDQESFNNV KQWLNEIDRY ASESVNKLLV GNKNDLTSQK VVSTETAQAF ADELGIPFLE TSAKNATNVE
201: EAFMAMTAAI KTRMASQPSG GSKPATVQIR GQPVNQQSGC CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.